Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03920-IBu Data

Chromosome: Chr 5.unplaced.SC 0195 - Coordinate: Chr 5.unplaced.SC 0195:96754-100497 - Strand: +


Fig. S5 for SmLINC03920-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
SmLINC03920-IBu 0 0.57 -1.42 7.61 10.79
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC03920-IBu 0.96 6.83e-09 1.77e-06
Smp_016490.2 SmLINC03920-IBu 0.90 4.55e-06 1.00e-04
Smp_037720.1 SmLINC03920-IBu 0.95 3.13e-08 4.92e-06
Smp_041540.1 SmLINC03920-IBu 0.94 1.09e-07 1.15e-05
Smp_070540.1 SmLINC03920-IBu 0.97 4.32e-10 2.98e-07
Smp_083430.1 SmLINC03920-IBu 0.92 8.23e-07 4.65e-05
Smp_085180.1 SmLINC03920-IBu 0.90 2.53e-06 1.00e-04
Smp_102780.1 SmLINC03920-IBu 0.90 2.99e-06 1.00e-04
Smp_105450.1 SmLINC03920-IBu 0.96 6.62e-09 1.73e-06
Smp_105450.2 SmLINC03920-IBu 0.95 5.73e-08 7.41e-06
Smp_123880.1 SmLINC03920-IBu 0.94 1.16e-07 1.19e-05
Smp_126340.1 SmLINC03920-IBu 0.97 3.02e-10 2.37e-07
Smp_131410.1 SmLINC03920-IBu 0.94 1.00e-07 1.08e-05
Smp_136730.1 SmLINC03920-IBu 0.97 8.26e-10 4.50e-07
Smp_137720.1 SmLINC03920-IBu 0.91 1.59e-06 7.40e-05
Smp_139160.1 SmLINC03920-IBu 0.93 3.18e-07 2.40e-05
Smp_139240.1 SmLINC03920-IBu 0.96 1.15e-08 2.50e-06
Smp_162320.1 SmLINC03920-IBu 0.92 8.21e-07 4.64e-05
Smp_163700.1 SmLINC03920-IBu 0.95 4.81e-08 6.58e-06
Smp_164320.1 SmLINC03920-IBu 0.92 8.91e-07 4.92e-05
Smp_181070.1 SmLINC03920-IBu 0.93 3.29e-07 2.45e-05
Smp_187140.1 SmLINC03920-IBu 0.95 4.26e-08 6.06e-06
Smp_194380.1 SmLINC03920-IBu 0.96 1.14e-08 2.49e-06
Smp_194910.1 SmLINC03920-IBu 0.94 8.81e-08 9.92e-06
Smp_196830.1 SmLINC03920-IBu 0.95 3.57e-08 5.38e-06
Smp_205580.1 SmLINC03920-IBu 0.94 1.11e-07 1.16e-05