Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03840-IBu Data

Chromosome: Chr 5 - Coordinate: Chr 5:5032691-5043378 - Strand: -


Fig. S5 for SmLINC03840-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
SmLINC03840-IBu 0 0.00 0.00 11.98 12.17
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC03840-IBu 0.97 2.96e-10 2.34e-07
Smp_033260.1 SmLINC03840-IBu 0.96 9.89e-09 2.26e-06
Smp_034980.2 SmLINC03840-IBu 0.92 5.88e-07 3.68e-05
Smp_038870.2 SmLINC03840-IBu 0.93 2.33e-07 1.93e-05
Smp_040970.2 SmLINC03840-IBu 0.96 2.62e-09 9.48e-07
Smp_045200.1 SmLINC03840-IBu 0.91 1.56e-06 7.31e-05
Smp_050350.3 SmLINC03840-IBu 0.93 4.21e-07 2.91e-05
Smp_051210.3 SmLINC03840-IBu 0.93 2.46e-07 2.01e-05
Smp_052280.2 SmLINC03840-IBu 0.91 1.60e-06 7.44e-05
Smp_055340.2 SmLINC03840-IBu 0.90 2.52e-06 1.00e-04
Smp_056360.3 SmLINC03840-IBu 0.91 2.34e-06 9.71e-05
Smp_056460.1 SmLINC03840-IBu 0.94 9.60e-08 1.05e-05
Smp_058660.1 SmLINC03840-IBu 0.96 1.32e-08 2.74e-06
Smp_068270.1 SmLINC03840-IBu 0.90 2.86e-06 1.00e-04
Smp_079420.1 SmLINC03840-IBu 0.97 5.23e-10 3.36e-07
Smp_082580.1 SmLINC03840-IBu 0.90 4.33e-06 1.00e-04
Smp_094050.1 SmLINC03840-IBu 0.93 3.79e-07 2.71e-05
Smp_095410.1 SmLINC03840-IBu 0.91 2.03e-06 8.80e-05
Smp_123550.1 SmLINC03840-IBu 0.93 4.41e-07 3.01e-05
Smp_137000.2 SmLINC03840-IBu 0.97 8.93e-10 4.74e-07
Smp_137320.1 SmLINC03840-IBu 0.93 3.70e-07 2.67e-05
Smp_141680.1 SmLINC03840-IBu 0.93 3.93e-07 2.78e-05
Smp_145400.1 SmLINC03840-IBu 0.96 8.05e-09 1.97e-06
Smp_150980.2 SmLINC03840-IBu 0.95 4.13e-08 5.93e-06
Smp_151120.1 SmLINC03840-IBu 0.96 4.42e-09 1.33e-06
Smp_156930.1 SmLINC03840-IBu 0.94 9.10e-08 1.01e-05
Smp_159070.2 SmLINC03840-IBu 0.95 3.16e-08 4.95e-06
Smp_166860.1 SmLINC03840-IBu 0.92 7.36e-07 4.30e-05
Smp_169670.1 SmLINC03840-IBu 0.90 4.03e-06 1.00e-04
Smp_170280.1 SmLINC03840-IBu 0.91 2.13e-06 9.11e-05
Smp_172480.1 SmLINC03840-IBu 0.98 5.61e-11 8.09e-08
Smp_172960.1 SmLINC03840-IBu 0.98 7.47e-12 2.30e-08
Smp_192780.1 SmLINC03840-IBu 0.90 2.66e-06 1.00e-04
Smp_194860.1 SmLINC03840-IBu 0.98 1.36e-10 1.42e-07
Smp_203090.1 SmLINC03840-IBu 0.99 5.35e-13 4.50e-09
Smp_205270.1 SmLINC03840-IBu 0.97 1.17e-09 5.63e-07