Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03837-IBu Data

Chromosome: Chr 5 - Coordinate: Chr 5:5031323-5043388 - Strand: -


Fig. S5 for SmLINC03837-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03837-IBu 0 1.86 2.33 6.42 5.00
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC03837-IBu 0.90 4.17e-06 1.00e-04
Smp_034980.2 SmLINC03837-IBu 0.90 4.71e-06 1.00e-04
Smp_068270.1 SmLINC03837-IBu 0.91 1.60e-06 7.44e-05
Smp_084270.1 SmLINC03837-IBu 0.90 4.21e-06 1.00e-04
Smp_125200.1 SmLINC03837-IBu 0.90 3.27e-06 1.00e-04
Smp_125210.1 SmLINC03837-IBu 0.90 3.69e-06 1.00e-04
Smp_160360.1 SmLINC03837-IBu 0.90 4.06e-06 1.00e-04
Smp_164550.1 SmLINC03837-IBu 0.90 2.79e-06 1.00e-04
Smp_200750.1 SmLINC03837-IBu 0.90 4.03e-06 1.00e-04