Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03777-IBu Data

Chromosome: Chr 5 - Coordinate: Chr 5:1003504-1006431 - Strand: +


Fig. S5 for SmLINC03777-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
SmLINC03777-IBu 0 2.02 2.13 4.73 4.50
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 SmLINC03777-IBu 0.97 5.64e-10 3.52e-07
Smp_056360.3 SmLINC03777-IBu 0.92 1.07e-06 5.62e-05
Smp_068270.1 SmLINC03777-IBu 0.93 3.84e-07 2.73e-05
Smp_125200.1 SmLINC03777-IBu 0.91 2.03e-06 8.80e-05
Smp_150980.2 SmLINC03777-IBu 0.90 3.23e-06 1.00e-04
Smp_154190.1 SmLINC03777-IBu 0.90 2.73e-06 1.00e-04
Smp_164550.1 SmLINC03777-IBu 0.92 5.44e-07 3.48e-05
Smp_170280.1 SmLINC03777-IBu 0.90 4.28e-06 1.00e-04
Smp_172480.1 SmLINC03777-IBu 0.90 3.00e-06 1.00e-04