Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03730-IBu Data

Chromosome: Chr 4.unplaced.SC 0032 - Coordinate: Chr 4.unplaced.SC 0032:2140840-2141552 - Strand: -


Fig. S5 for SmLINC03730-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03730-IBu 0 0.00 0.00 6.60 6.55
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC03730-IBu 0.90 3.78e-06 1.00e-04
Smp_031040.1 SmLINC03730-IBu 0.92 6.98e-07 4.14e-05
Smp_031770.10 SmLINC03730-IBu 0.93 2.04e-07 1.76e-05
Smp_034980.2 SmLINC03730-IBu 0.91 2.10e-06 9.00e-05
Smp_040970.2 SmLINC03730-IBu 0.90 4.49e-06 1.00e-04
Smp_045200.1 SmLINC03730-IBu 0.92 1.11e-06 5.74e-05
Smp_051210.3 SmLINC03730-IBu 0.91 1.54e-06 7.25e-05
Smp_055340.2 SmLINC03730-IBu 0.90 3.98e-06 1.00e-04
Smp_056460.1 SmLINC03730-IBu 0.92 8.97e-07 4.94e-05
Smp_058660.1 SmLINC03730-IBu 0.96 2.86e-09 1.00e-06
Smp_068270.1 SmLINC03730-IBu 0.93 2.09e-07 1.79e-05
Smp_079420.1 SmLINC03730-IBu 0.90 3.07e-06 1.00e-04
Smp_082580.1 SmLINC03730-IBu 0.91 1.58e-06 7.37e-05
Smp_095410.1 SmLINC03730-IBu 0.91 1.53e-06 7.22e-05
Smp_123550.1 SmLINC03730-IBu 0.90 4.19e-06 1.00e-04
Smp_125210.1 SmLINC03730-IBu 0.90 2.65e-06 1.00e-04
Smp_137000.2 SmLINC03730-IBu 0.90 3.19e-06 1.00e-04
Smp_137320.1 SmLINC03730-IBu 0.93 3.87e-07 2.75e-05
Smp_141680.1 SmLINC03730-IBu 0.95 4.23e-08 6.03e-06
Smp_145400.1 SmLINC03730-IBu 0.98 1.12e-11 2.94e-08
Smp_150980.2 SmLINC03730-IBu 0.94 1.29e-07 1.29e-05
Smp_151120.1 SmLINC03730-IBu 0.97 1.07e-09 5.33e-07
Smp_170280.1 SmLINC03730-IBu 0.94 7.91e-08 9.22e-06
Smp_172480.1 SmLINC03730-IBu 0.95 3.09e-08 4.88e-06
Smp_172960.1 SmLINC03730-IBu 0.96 3.02e-09 1.04e-06
Smp_194860.1 SmLINC03730-IBu 0.94 1.54e-07 1.45e-05
Smp_194960.1 SmLINC03730-IBu 0.90 3.95e-06 1.00e-04
Smp_203090.1 SmLINC03730-IBu 0.94 1.75e-07 1.59e-05
Smp_205270.1 SmLINC03730-IBu 0.96 1.34e-08 2.78e-06