Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03727-IBu Data

Chromosome: Chr 4.unplaced.SC 0032 - Coordinate: Chr 4.unplaced.SC 0032:2050619-2054680 - Strand: -


Fig. S5 for SmLINC03727-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03727-IBu 0 1.47 4.73 6.29 6.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_051210.3 0 3.15 11.52 13.74 13.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC03727-IBu 0.90 2.53e-06 1.00e-04
Smp_045200.1 SmLINC03727-IBu 0.93 1.97e-07 1.72e-05
Smp_051210.3 SmLINC03727-IBu 0.91 1.96e-06 8.60e-05
Smp_055340.2 SmLINC03727-IBu 0.95 5.63e-08 7.32e-06
Smp_058660.1 SmLINC03727-IBu 0.91 2.23e-06 9.39e-05
Smp_125200.1 SmLINC03727-IBu 0.91 2.25e-06 9.47e-05
Smp_137320.1 SmLINC03727-IBu 0.90 2.58e-06 1.00e-04
Smp_141680.1 SmLINC03727-IBu 0.92 9.29e-07 5.06e-05
Smp_145400.1 SmLINC03727-IBu 0.94 7.31e-08 8.74e-06
Smp_150980.2 SmLINC03727-IBu 0.90 3.34e-06 1.00e-04
Smp_170280.1 SmLINC03727-IBu 0.91 1.29e-06 6.41e-05
Smp_172480.1 SmLINC03727-IBu 0.91 1.24e-06 6.23e-05
Smp_205270.1 SmLINC03727-IBu 0.91 1.79e-06 8.05e-05