Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03718-IBu Data

Chromosome: Chr 4.unplaced.SC 0032 - Coordinate: Chr 4.unplaced.SC 0032:404493-405286 - Strand: +


Fig. S5 for SmLINC03718-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
SmLINC03718-IBu 0 6.68 7.60 6.73 4.75
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059530.1 SmLINC03718-IBu 0.90 4.62e-06 1.00e-04
Smp_083380.2 SmLINC03718-IBu 0.91 1.66e-06 7.65e-05
Smp_084940.2 SmLINC03718-IBu 0.90 4.28e-06 1.00e-04
Smp_141630.4 SmLINC03718-IBu 0.96 9.37e-09 2.18e-06