Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03700-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:30684458-30689824 - Strand: -


Fig. S5 for SmLINC03700-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03700-IBu 0 -1.61 0.71 4.14 5.67
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_130100.1 0 -1.34 3.61 11.71 14.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 SmLINC03700-IBu 0.90 4.48e-06 1.00e-04
Smp_037720.1 SmLINC03700-IBu 0.95 1.78e-08 3.35e-06
Smp_041540.1 SmLINC03700-IBu 0.90 3.84e-06 1.00e-04
Smp_070540.1 SmLINC03700-IBu 0.90 4.36e-06 1.00e-04
Smp_130100.1 SmLINC03700-IBu 0.91 1.88e-06 8.34e-05
Smp_137810.1 SmLINC03700-IBu 0.92 6.48e-07 3.93e-05
Smp_140720.1 SmLINC03700-IBu 0.96 3.95e-09 1.23e-06
Smp_155570.1 SmLINC03700-IBu 0.92 1.13e-06 5.83e-05
Smp_192780.1 SmLINC03700-IBu 0.92 8.86e-07 4.90e-05
Smp_196830.1 SmLINC03700-IBu 0.92 7.54e-07 4.37e-05
Smp_203030.1 SmLINC03700-IBu 0.92 6.42e-07 3.91e-05