Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03690-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:28621951-28624303 - Strand: -


Fig. S5 for SmLINC03690-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
SmLINC03690-IBu 0 2.49 -2.52 7.90 7.70
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC03690-IBu 0.92 5.95e-07 3.71e-05
Smp_031040.1 SmLINC03690-IBu 0.92 6.09e-07 3.77e-05
Smp_031770.10 SmLINC03690-IBu 0.93 4.37e-07 2.99e-05
Smp_034980.2 SmLINC03690-IBu 0.97 5.49e-10 3.46e-07
Smp_040970.2 SmLINC03690-IBu 0.92 1.00e-06 5.35e-05
Smp_045200.1 SmLINC03690-IBu 0.92 5.28e-07 3.41e-05
Smp_056360.3 SmLINC03690-IBu 0.91 2.44e-06 1.00e-04
Smp_058660.1 SmLINC03690-IBu 0.94 7.30e-08 8.73e-06
Smp_068270.1 SmLINC03690-IBu 0.95 2.79e-08 4.54e-06
Smp_082580.1 SmLINC03690-IBu 0.91 1.43e-06 6.89e-05
Smp_084270.1 SmLINC03690-IBu 0.90 3.25e-06 1.00e-04
Smp_095410.1 SmLINC03690-IBu 0.90 2.60e-06 1.00e-04
Smp_125200.1 SmLINC03690-IBu 0.92 1.19e-06 6.03e-05
Smp_125210.1 SmLINC03690-IBu 0.93 2.64e-07 2.11e-05
Smp_134960.1 SmLINC03690-IBu 0.90 3.21e-06 1.00e-04
Smp_137320.1 SmLINC03690-IBu 0.92 8.75e-07 4.85e-05
Smp_141680.1 SmLINC03690-IBu 0.92 5.88e-07 3.68e-05
Smp_145400.1 SmLINC03690-IBu 0.96 3.71e-09 1.18e-06
Smp_150980.2 SmLINC03690-IBu 0.94 7.38e-08 8.80e-06
Smp_151120.1 SmLINC03690-IBu 0.93 5.16e-07 3.35e-05
Smp_154190.1 SmLINC03690-IBu 0.92 7.09e-07 4.19e-05
Smp_159070.2 SmLINC03690-IBu 0.91 1.26e-06 6.28e-05
Smp_164550.1 SmLINC03690-IBu 0.95 5.61e-08 7.30e-06
Smp_170280.1 SmLINC03690-IBu 0.95 3.49e-08 5.29e-06
Smp_172480.1 SmLINC03690-IBu 0.95 1.60e-08 3.13e-06
Smp_172960.1 SmLINC03690-IBu 0.92 5.72e-07 3.61e-05
Smp_194860.1 SmLINC03690-IBu 0.90 3.24e-06 1.00e-04
Smp_194960.1 SmLINC03690-IBu 0.91 2.01e-06 8.74e-05
Smp_200750.1 SmLINC03690-IBu 0.90 3.67e-06 1.00e-04
Smp_203090.1 SmLINC03690-IBu 0.90 2.78e-06 1.00e-04
Smp_205270.1 SmLINC03690-IBu 0.95 1.62e-08 3.15e-06