Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03685-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:28427392-28428201 - Strand: +


Fig. S5 for SmLINC03685-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03685-IBu 0 5.50 2.12 3.49 9.24
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 SmLINC03685-IBu 0.95 2.76e-08 4.51e-06
Smp_070540.1 SmLINC03685-IBu 0.92 8.03e-07 4.57e-05
Smp_089270.1 SmLINC03685-IBu 0.96 1.11e-08 2.44e-06
Smp_105450.1 SmLINC03685-IBu 0.91 2.38e-06 9.86e-05
Smp_105450.2 SmLINC03685-IBu 0.90 2.82e-06 1.00e-04
Smp_126340.1 SmLINC03685-IBu 0.91 2.11e-06 9.04e-05
Smp_137460.1 SmLINC03685-IBu 0.95 5.83e-08 7.49e-06
Smp_152150.1 SmLINC03685-IBu 0.96 2.49e-09 9.17e-07
Smp_164400.1 SmLINC03685-IBu 0.96 9.65e-09 2.23e-06
Smp_167830.1 SmLINC03685-IBu 0.95 2.23e-08 3.91e-06
Smp_170840.1 SmLINC03685-IBu 0.96 4.81e-09 1.40e-06