Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03684-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:28427392-28428201 - Strand: +


Fig. S5 for SmLINC03684-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03684-IBu 0 1.14 -4.16 -1.10 5.16
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC03684-IBu 0.96 7.94e-09 1.96e-06
Smp_007950.1 SmLINC03684-IBu 0.91 2.30e-06 9.60e-05
Smp_016490.2 SmLINC03684-IBu 0.90 3.52e-06 1.00e-04
Smp_041540.1 SmLINC03684-IBu 0.95 5.89e-08 7.54e-06
Smp_070540.1 SmLINC03684-IBu 0.95 4.18e-08 5.98e-06
Smp_085180.1 SmLINC03684-IBu 0.91 2.29e-06 9.57e-05
Smp_102780.1 SmLINC03684-IBu 0.90 4.00e-06 1.00e-04
Smp_105450.1 SmLINC03684-IBu 0.97 1.91e-10 1.76e-07
Smp_105450.2 SmLINC03684-IBu 0.97 1.01e-09 5.13e-07
Smp_123880.1 SmLINC03684-IBu 0.91 2.31e-06 9.63e-05
Smp_126340.1 SmLINC03684-IBu 0.97 2.09e-09 8.20e-07
Smp_130100.1 SmLINC03684-IBu 0.91 2.32e-06 9.68e-05
Smp_131410.1 SmLINC03684-IBu 0.91 2.06e-06 8.88e-05
Smp_136730.1 SmLINC03684-IBu 0.96 6.25e-09 1.67e-06
Smp_137460.1 SmLINC03684-IBu 0.94 9.27e-08 1.02e-05
Smp_137700.1 SmLINC03684-IBu 0.97 8.66e-10 4.64e-07
Smp_137720.1 SmLINC03684-IBu 0.93 3.70e-07 2.66e-05
Smp_138360.1 SmLINC03684-IBu 0.96 1.06e-08 2.37e-06
Smp_139160.1 SmLINC03684-IBu 0.96 8.75e-09 2.08e-06
Smp_139240.1 SmLINC03684-IBu 0.94 1.37e-07 1.34e-05
Smp_152150.1 SmLINC03684-IBu 0.91 1.47e-06 7.01e-05
Smp_162320.1 SmLINC03684-IBu 0.93 2.55e-07 2.06e-05
Smp_163700.1 SmLINC03684-IBu 0.90 2.56e-06 1.00e-04
Smp_164320.1 SmLINC03684-IBu 0.90 3.09e-06 1.00e-04
Smp_164400.1 SmLINC03684-IBu 0.94 6.20e-08 7.81e-06
Smp_181070.1 SmLINC03684-IBu 0.95 1.74e-08 3.31e-06
Smp_187140.1 SmLINC03684-IBu 0.93 2.02e-07 1.75e-05
Smp_194380.1 SmLINC03684-IBu 0.92 1.07e-06 5.60e-05
Smp_194910.1 SmLINC03684-IBu 0.95 4.14e-08 5.95e-06
Smp_205580.1 SmLINC03684-IBu 0.94 1.02e-07 1.10e-05