Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03667-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:27190536-27194274 - Strand: -


Fig. S5 for SmLINC03667-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
SmLINC03667-IBu 0 0.11 -1.85 -4.78 -4.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC03667-IBu 0.94 1.21e-07 1.23e-05
Smp_111640.1 SmLINC03667-IBu 0.92 6.48e-07 3.93e-05
Smp_112090.1 SmLINC03667-IBu 0.91 1.50e-06 7.13e-05
Smp_125070.1 SmLINC03667-IBu 0.92 7.11e-07 4.20e-05
Smp_184710.1 SmLINC03667-IBu 0.92 1.00e-06 5.37e-05
Smp_185830.1 SmLINC03667-IBu 0.92 9.67e-07 5.21e-05
Smp_204360.1 SmLINC03667-IBu 0.92 9.90e-07 5.30e-05
Smp_205330.1 SmLINC03667-IBu 0.91 1.88e-06 8.34e-05
Smp_205450.1 SmLINC03667-IBu 0.91 1.74e-06 7.89e-05