Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03639-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:26552660-26553541 - Strand: +


Fig. S5 for SmLINC03639-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03639-IBu 0 4.66 3.63 7.42 5.42
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC03639-IBu 0.93 3.68e-07 2.65e-05
Smp_014780.1 SmLINC03639-IBu 0.90 2.83e-06 1.00e-04
Smp_017610.1 SmLINC03639-IBu 0.91 2.28e-06 9.54e-05
Smp_081920.1 SmLINC03639-IBu 0.90 3.33e-06 1.00e-04
Smp_082580.1 SmLINC03639-IBu 0.90 3.50e-06 1.00e-04
Smp_105730.1 SmLINC03639-IBu 0.93 2.51e-07 2.03e-05
Smp_118560.1 SmLINC03639-IBu 0.90 4.75e-06 1.00e-04
Smp_131840.1 SmLINC03639-IBu 0.94 1.08e-07 1.14e-05
Smp_154180.1 SmLINC03639-IBu 0.94 6.49e-08 8.06e-06
Smp_154190.1 SmLINC03639-IBu 0.93 2.57e-07 2.07e-05
Smp_160360.1 SmLINC03639-IBu 0.92 9.17e-07 5.02e-05
Smp_164550.1 SmLINC03639-IBu 0.90 2.73e-06 1.00e-04
Smp_172520.1 SmLINC03639-IBu 0.93 3.24e-07 2.43e-05
Smp_194960.1 SmLINC03639-IBu 0.91 1.65e-06 7.61e-05
Smp_194970.1 SmLINC03639-IBu 0.92 1.15e-06 5.91e-05
Smp_194980.1 SmLINC03639-IBu 0.91 1.34e-06 6.57e-05
Smp_197400.1 SmLINC03639-IBu 0.94 1.51e-07 1.44e-05