Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03635-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:26555869-26561388 - Strand: +


Fig. S5 for SmLINC03635-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
SmLINC03635-IBu 0 0.00 3.13 9.46 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC03635-IBu 0.90 3.28e-06 1.00e-04
Smp_034980.2 SmLINC03635-IBu 0.95 3.97e-08 5.78e-06
Smp_068270.1 SmLINC03635-IBu 0.92 7.80e-07 4.48e-05
Smp_125200.1 SmLINC03635-IBu 0.94 1.03e-07 1.11e-05
Smp_125210.1 SmLINC03635-IBu 0.91 2.30e-06 9.62e-05
Smp_131840.1 SmLINC03635-IBu 0.91 2.07e-06 8.91e-05
Smp_150980.2 SmLINC03635-IBu 0.92 8.02e-07 4.57e-05
Smp_154180.1 SmLINC03635-IBu 0.92 1.17e-06 5.98e-05
Smp_154190.1 SmLINC03635-IBu 0.97 2.20e-09 8.47e-07
Smp_160360.1 SmLINC03635-IBu 0.94 1.70e-07 1.56e-05
Smp_164550.1 SmLINC03635-IBu 0.96 9.45e-09 2.19e-06
Smp_194960.1 SmLINC03635-IBu 0.90 4.41e-06 1.00e-04
Smp_197400.1 SmLINC03635-IBu 0.92 1.17e-06 5.99e-05