Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03607-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:24851121-24855738 - Strand: -


Fig. S5 for SmLINC03607-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC03607-IBu 0 0.00 0.00 6.53 7.93
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC03607-IBu 0.91 1.26e-06 6.29e-05
Smp_007950.1 SmLINC03607-IBu 0.90 3.82e-06 1.00e-04
Smp_016490.2 SmLINC03607-IBu 0.96 8.59e-09 2.06e-06
Smp_024180.1 SmLINC03607-IBu 0.95 1.65e-08 3.19e-06
Smp_024180.2 SmLINC03607-IBu 0.97 9.57e-10 4.95e-07
Smp_028870.1 SmLINC03607-IBu 0.96 2.31e-09 8.75e-07
Smp_033260.1 SmLINC03607-IBu 0.95 3.68e-08 5.48e-06
Smp_037720.1 SmLINC03607-IBu 0.91 1.89e-06 8.36e-05
Smp_038870.2 SmLINC03607-IBu 0.92 7.82e-07 4.49e-05
Smp_050350.3 SmLINC03607-IBu 0.96 4.69e-09 1.38e-06
Smp_052280.2 SmLINC03607-IBu 0.93 3.07e-07 2.34e-05
Smp_056460.1 SmLINC03607-IBu 0.93 4.44e-07 3.02e-05
Smp_079420.1 SmLINC03607-IBu 0.92 1.05e-06 5.54e-05
Smp_083430.1 SmLINC03607-IBu 0.92 6.37e-07 3.89e-05
Smp_085180.1 SmLINC03607-IBu 0.94 6.40e-08 7.99e-06
Smp_086450.3 SmLINC03607-IBu 0.90 4.32e-06 1.00e-04
Smp_094050.1 SmLINC03607-IBu 0.94 1.28e-07 1.28e-05
Smp_102780.1 SmLINC03607-IBu 0.96 1.09e-08 2.43e-06
Smp_123880.1 SmLINC03607-IBu 0.93 4.12e-07 2.87e-05
Smp_130100.1 SmLINC03607-IBu 0.95 5.84e-08 7.50e-06
Smp_131410.1 SmLINC03607-IBu 0.93 3.05e-07 2.33e-05
Smp_131490.1 SmLINC03607-IBu 0.96 3.24e-09 1.08e-06
Smp_137720.1 SmLINC03607-IBu 0.92 8.51e-07 4.76e-05
Smp_137810.1 SmLINC03607-IBu 0.94 1.06e-07 1.12e-05
Smp_139240.1 SmLINC03607-IBu 0.91 2.36e-06 9.80e-05
Smp_140720.1 SmLINC03607-IBu 0.94 6.48e-08 8.05e-06
Smp_155570.1 SmLINC03607-IBu 0.97 3.39e-10 2.55e-07
Smp_156930.1 SmLINC03607-IBu 0.92 7.35e-07 4.29e-05
Smp_159650.1 SmLINC03607-IBu 0.96 8.80e-09 2.09e-06
Smp_162320.1 SmLINC03607-IBu 0.93 3.31e-07 2.46e-05
Smp_163700.1 SmLINC03607-IBu 0.91 2.22e-06 9.36e-05
Smp_164320.1 SmLINC03607-IBu 0.94 9.50e-08 1.04e-05
Smp_181070.1 SmLINC03607-IBu 0.90 3.74e-06 1.00e-04
Smp_187140.1 SmLINC03607-IBu 0.92 1.11e-06 5.74e-05
Smp_192780.1 SmLINC03607-IBu 0.92 5.81e-07 3.64e-05
Smp_194380.1 SmLINC03607-IBu 0.91 1.82e-06 8.14e-05
Smp_194910.1 SmLINC03607-IBu 0.91 1.87e-06 8.32e-05
Smp_196830.1 SmLINC03607-IBu 0.91 1.41e-06 6.81e-05
Smp_201910.1 SmLINC03607-IBu 0.92 7.01e-07 4.16e-05
Smp_202610.1 SmLINC03607-IBu 0.97 6.64e-10 3.92e-07
Smp_203030.1 SmLINC03607-IBu 0.96 5.99e-09 1.62e-06
Smp_205580.1 SmLINC03607-IBu 0.91 1.40e-06 6.78e-05