Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03486-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:20445090-20448534 - Strand: -


Fig. 7A S3 for SmLINC03486-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062610.2 SmLINC03486-IBu 0.53 3.90e-02 9.30e-02
Fig. 6A for SmLINC03486-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_120020.1 0 -0.19 -0.59 -3.84 -5.21
Smp_148570.1 0 2.59 1.60 -3.08 -5.21
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_027010.1 0 1.13 0.23 -1.74 -4.63
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_091390.1 0 -0.40 -2.18 -5.03 -4.11
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_077860.1 0 1.35 0.90 -2.31 -3.33
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_205840.1 0 0.97 0.46 -4.31 -2.31
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_204950.1 0 5.97 5.20 0.00 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017080.1 SmLINC03486-IBu 0.86 2.71e-05 5.00e-04
Smp_027010.1 SmLINC03486-IBu 0.85 5.78e-05 9.00e-04
Smp_032280.1 SmLINC03486-IBu 0.83 1.00e-04 1.50e-03
Smp_035020.1 SmLINC03486-IBu 0.92 9.96e-07 5.11e-05
Smp_045950.1 SmLINC03486-IBu 0.80 2.00e-04 2.90e-03
Smp_077860.1 SmLINC03486-IBu 0.84 6.32e-05 1.00e-03
Smp_079280.1 SmLINC03486-IBu 0.88 9.57e-06 2.00e-04
Smp_084210.1 SmLINC03486-IBu 0.84 6.53e-05 1.00e-03
Smp_091390.1 SmLINC03486-IBu 0.81 2.00e-04 2.40e-03
Smp_120020.1 SmLINC03486-IBu 0.81 2.00e-04 2.50e-03
Smp_126440.1 SmLINC03486-IBu 0.82 1.00e-04 2.10e-03
Smp_138890.1 SmLINC03486-IBu 0.83 1.00e-04 1.60e-03
Smp_142260.1 SmLINC03486-IBu 0.83 1.00e-04 1.40e-03
Smp_142460.1 SmLINC03486-IBu 0.81 2.00e-04 2.40e-03
Smp_143450.1 SmLINC03486-IBu 0.80 2.00e-04 3.00e-03
Smp_148570.1 SmLINC03486-IBu 0.86 3.16e-05 6.00e-04
Smp_157750.1 SmLINC03486-IBu 0.84 7.97e-05 1.10e-03
Smp_159350.1 SmLINC03486-IBu 0.84 8.33e-05 1.20e-03
Smp_161230.1 SmLINC03486-IBu 0.82 1.00e-04 1.80e-03
Smp_164270.1 SmLINC03486-IBu 0.87 2.14e-05 4.00e-04
Smp_176230.2 SmLINC03486-IBu 0.86 2.89e-05 5.00e-04
Smp_179390.1 SmLINC03486-IBu 0.81 2.00e-04 2.40e-03
Smp_179670.1 SmLINC03486-IBu 0.82 1.00e-04 1.70e-03
Smp_194150.1 SmLINC03486-IBu 0.80 2.00e-04 2.80e-03
Smp_200600.1 SmLINC03486-IBu 0.84 8.17e-05 1.20e-03
Smp_201230.1 SmLINC03486-IBu 0.86 3.53e-05 6.00e-04
Smp_204820.1 SmLINC03486-IBu 0.81 2.00e-04 2.60e-03
Smp_204830.1 SmLINC03486-IBu 0.84 7.19e-05 1.10e-03
Smp_204950.1 SmLINC03486-IBu 0.82 1.00e-04 1.80e-03
Smp_205000.1 SmLINC03486-IBu 0.81 2.00e-04 2.40e-03
Smp_205030.1 SmLINC03486-IBu 0.83 1.00e-04 1.60e-03
Smp_205840.1 SmLINC03486-IBu 0.87 1.53e-05 3.00e-04
Smp_206250.1 SmLINC03486-IBu 0.81 1.00e-04 2.20e-03