Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03485-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:20445090-20448520 - Strand: -


Fig. 7A S3 for SmLINC03485-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
Smp_152970.1 0 0.26 1.74 6.26 7.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_062610.2 SmLINC03485-IBu 0.65 7.50e-03 2.81e-02
Smp_152970.1 SmLINC03485-IBu -0.73 1.90e-03 1.05e-02
Fig. 6A for SmLINC03485-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_080120.1 0 -1.43 -1.90 -9.79 -9.79
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_113620.5 0 -0.44 0.26 -7.71 -7.71
Smp_099160.2 0 -1.87 -2.30 -5.96 -7.41
Smp_187740.1 0 -1.94 -3.53 -5.17 -6.76
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_179110.1 0 -1.09 -2.38 -5.56 -6.62
Smp_052230.1 0 -1.19 -3.35 -5.82 -6.52
Smp_185900.1 0 -1.18 -1.69 -5.74 -6.26
Smp_031920.5 0 -0.42 -0.94 -6.54 -5.88
Smp_121430.1 0 -1.15 -2.15 -5.82 -5.43
Smp_146230.1 0 -1.07 -2.58 -3.88 -5.04
Smp_169590.1 0 -0.89 -3.79 -3.91 -5.03
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91
Smp_085790.1 0 -1.16 -3.98 -5.85 -4.07
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_034680.1 0 -1.23 -1.04 -6.49 -1.58
Smp_118190.1 0 -0.82 -6.89 0.82 1.73
Smp_174720.1 0 -1.01 -4.25 1.64 2.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017080.1 SmLINC03485-IBu 0.82 1.00e-04 2.10e-03
Smp_024140.1 SmLINC03485-IBu 0.82 1.00e-04 1.90e-03
Smp_031920.5 SmLINC03485-IBu 0.80 3.00e-04 3.40e-03
Smp_034680.1 SmLINC03485-IBu 0.80 2.00e-04 3.00e-03
Smp_052230.1 SmLINC03485-IBu 0.81 2.00e-04 2.70e-03
Smp_077880.1 SmLINC03485-IBu 0.92 9.46e-07 4.93e-05
Smp_080120.1 SmLINC03485-IBu 0.80 2.00e-04 2.90e-03
Smp_085790.1 SmLINC03485-IBu 0.82 1.00e-04 1.80e-03
Smp_099160.2 SmLINC03485-IBu 0.90 2.91e-06 1.00e-04
Smp_113620.5 SmLINC03485-IBu 0.88 8.87e-06 2.00e-04
Smp_118190.1 SmLINC03485-IBu -0.80 2.00e-04 2.80e-03
Smp_121430.1 SmLINC03485-IBu 0.82 1.00e-04 1.80e-03
Smp_126440.1 SmLINC03485-IBu 0.86 3.02e-05 5.00e-04
Smp_128400.1 SmLINC03485-IBu 0.86 3.89e-05 7.00e-04
Smp_146230.1 SmLINC03485-IBu 0.86 2.73e-05 5.00e-04
Smp_169590.1 SmLINC03485-IBu 0.81 2.00e-04 2.60e-03
Smp_174720.1 SmLINC03485-IBu -0.80 2.00e-04 3.00e-03
Smp_179110.1 SmLINC03485-IBu 0.87 2.45e-05 5.00e-04
Smp_185900.1 SmLINC03485-IBu 0.81 2.00e-04 2.70e-03
Smp_187740.1 SmLINC03485-IBu 0.80 2.00e-04 3.00e-03
Smp_194150.1 SmLINC03485-IBu 0.88 1.28e-05 3.00e-04
Smp_205030.1 SmLINC03485-IBu 0.80 2.00e-04 2.90e-03
Smp_206250.1 SmLINC03485-IBu 0.84 6.89e-05 1.00e-03
Fig. S5 for SmLINC03485-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077880.1 SmLINC03485-IBu 0.92 9.46e-07 5.13e-05