Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03456-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:19712225-19714941 - Strand: +


Fig. S5 for SmLINC03456-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC03456-IBu 0 0.00 4.46 7.74 9.08
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC03456-IBu 0.96 1.21e-08 2.59e-06
Smp_016490.2 SmLINC03456-IBu 0.93 3.84e-07 2.73e-05
Smp_024180.1 SmLINC03456-IBu 0.92 5.56e-07 3.53e-05
Smp_024180.2 SmLINC03456-IBu 0.94 1.23e-07 1.24e-05
Smp_028870.1 SmLINC03456-IBu 0.93 2.38e-07 1.96e-05
Smp_033260.1 SmLINC03456-IBu 0.94 7.71e-08 9.06e-06
Smp_038870.2 SmLINC03456-IBu 0.91 2.19e-06 9.29e-05
Smp_050350.3 SmLINC03456-IBu 0.97 1.88e-09 7.64e-07
Smp_052280.2 SmLINC03456-IBu 0.95 1.82e-08 3.41e-06
Smp_056460.1 SmLINC03456-IBu 0.93 4.15e-07 2.89e-05
Smp_079420.1 SmLINC03456-IBu 0.92 1.12e-06 5.81e-05
Smp_085180.1 SmLINC03456-IBu 0.91 2.25e-06 9.47e-05
Smp_086450.3 SmLINC03456-IBu 0.92 9.13e-07 5.00e-05
Smp_094050.1 SmLINC03456-IBu 0.96 1.30e-08 2.73e-06
Smp_095410.1 SmLINC03456-IBu 0.93 4.38e-07 2.99e-05
Smp_102780.1 SmLINC03456-IBu 0.93 3.21e-07 2.42e-05
Smp_130100.1 SmLINC03456-IBu 0.92 6.30e-07 3.86e-05
Smp_131410.1 SmLINC03456-IBu 0.90 4.40e-06 1.00e-04
Smp_131490.1 SmLINC03456-IBu 0.93 3.94e-07 2.78e-05
Smp_137000.2 SmLINC03456-IBu 0.90 2.78e-06 1.00e-04
Smp_137810.1 SmLINC03456-IBu 0.92 5.73e-07 3.61e-05
Smp_140720.1 SmLINC03456-IBu 0.95 4.64e-08 6.42e-06
Smp_155570.1 SmLINC03456-IBu 0.94 9.27e-08 1.02e-05
Smp_159650.1 SmLINC03456-IBu 0.93 3.47e-07 2.55e-05
Smp_164320.1 SmLINC03456-IBu 0.90 2.67e-06 1.00e-04
Smp_169670.1 SmLINC03456-IBu 0.90 3.08e-06 1.00e-04
Smp_192780.1 SmLINC03456-IBu 0.96 3.12e-09 1.06e-06
Smp_202610.1 SmLINC03456-IBu 0.94 1.06e-07 1.13e-05
Smp_203030.1 SmLINC03456-IBu 0.94 1.03e-07 1.10e-05