Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03450-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:18837097-18842066 - Strand: -


Fig. S5 for SmLINC03450-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC03450-IBu 0 0.92 -1.05 -3.79 -3.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC03450-IBu 0.95 5.49e-08 7.20e-06
Smp_125070.1 SmLINC03450-IBu 0.93 4.01e-07 2.81e-05
Smp_184710.1 SmLINC03450-IBu 0.97 2.71e-10 2.21e-07
Smp_185170.1 SmLINC03450-IBu 0.92 1.06e-06 5.56e-05
Smp_185680.1 SmLINC03450-IBu 0.91 1.72e-06 7.82e-05
Smp_185830.1 SmLINC03450-IBu 0.97 5.95e-10 3.65e-07
Smp_204360.1 SmLINC03450-IBu 0.96 9.03e-09 2.13e-06
Smp_205450.1 SmLINC03450-IBu 0.93 2.83e-07 2.21e-05