Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03443-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:18519674-18541172 - Strand: -


Fig. 6A for SmLINC03443-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_008390.1 0 0.53 -0.79 -6.20 -6.20
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55
Smp_015190.1 0 0.66 -0.56 -4.33 -5.46
Smp_158310.1 0 -0.00 -0.69 -4.11 -5.43
Smp_034980.1 0 0.00 -0.47 -4.42 -5.42
Smp_148570.1 0 2.59 1.60 -3.08 -5.21
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_203990.1 0 0.81 0.18 -4.26 -4.99
Smp_078550.1 0 -0.05 -0.57 -4.38 -4.91
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_027010.1 0 1.13 0.23 -1.74 -4.63
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_079960.1 0 1.02 -1.37 -4.93 -4.30
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_107590.1 0 4.34 2.46 -4.22 -4.22
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_077860.1 0 1.35 0.90 -2.31 -3.33
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_045950.1 0 0.07 -1.04 -4.82 -3.27
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_205840.1 0 0.97 0.46 -4.31 -2.31
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_024360.2 0 3.66 2.97 0.48 -1.11
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_204950.1 0 5.97 5.20 0.00 0.00
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_139700.1 0 6.89 4.15 2.03 5.39
Smp_039640.1 0 9.69 9.38 7.53 8.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005080.1 SmLINC03443-IBu 0.92 9.47e-07 4.93e-05
Smp_008390.1 SmLINC03443-IBu 0.80 2.00e-04 2.80e-03
Smp_015190.1 SmLINC03443-IBu 0.84 6.97e-05 1.00e-03
Smp_017080.1 SmLINC03443-IBu 0.85 5.57e-05 9.00e-04
Smp_021460.1 SmLINC03443-IBu 0.92 7.09e-07 4.02e-05
Smp_024360.2 SmLINC03443-IBu 0.89 8.80e-06 2.00e-04
Smp_027010.1 SmLINC03443-IBu 0.87 2.16e-05 4.00e-04
Smp_032280.1 SmLINC03443-IBu 0.95 4.72e-08 6.13e-06
Smp_034980.1 SmLINC03443-IBu 0.80 2.00e-04 2.90e-03
Smp_035020.1 SmLINC03443-IBu 0.92 8.24e-07 4.47e-05
Smp_037610.1 SmLINC03443-IBu 0.82 1.00e-04 1.80e-03
Smp_038980.2 SmLINC03443-IBu 0.83 9.42e-05 1.30e-03
Smp_039640.1 SmLINC03443-IBu 0.80 3.00e-04 3.30e-03
Smp_045950.1 SmLINC03443-IBu 0.86 3.89e-05 7.00e-04
Smp_048060.1 SmLINC03443-IBu 0.88 1.19e-05 3.00e-04
Smp_048160.1 SmLINC03443-IBu 0.83 1.00e-04 1.60e-03
Smp_049300.3 SmLINC03443-IBu 0.82 1.00e-04 1.70e-03
Smp_068270.3 SmLINC03443-IBu 0.84 7.81e-05 1.10e-03
Smp_069220.1 SmLINC03443-IBu 0.82 1.00e-04 2.00e-03
Smp_075640.2 SmLINC03443-IBu 0.84 8.36e-05 1.20e-03
Smp_077860.1 SmLINC03443-IBu 0.89 6.06e-06 1.00e-04
Smp_078550.1 SmLINC03443-IBu 0.81 2.00e-04 2.40e-03
Smp_079280.1 SmLINC03443-IBu 0.94 1.52e-07 1.37e-05
Smp_079960.1 SmLINC03443-IBu 0.80 2.00e-04 2.80e-03
Smp_084210.1 SmLINC03443-IBu 0.95 2.71e-08 4.20e-06
Smp_093740.2 SmLINC03443-IBu 0.88 1.06e-05 2.00e-04
Smp_103140.1 SmLINC03443-IBu 0.88 9.58e-06 2.00e-04
Smp_106930.1 SmLINC03443-IBu 0.83 9.69e-05 1.30e-03
Smp_107590.1 SmLINC03443-IBu 0.80 2.00e-04 2.80e-03
Smp_123250.1 SmLINC03443-IBu 0.84 8.19e-05 1.20e-03
Smp_133830.1 SmLINC03443-IBu 0.82 1.00e-04 1.70e-03
Smp_136840.1 SmLINC03443-IBu 0.85 4.30e-05 7.00e-04
Smp_138890.1 SmLINC03443-IBu 0.93 2.34e-07 1.85e-05
Smp_139700.1 SmLINC03443-IBu 0.80 2.00e-04 3.10e-03
Smp_139980.1 SmLINC03443-IBu 0.82 1.00e-04 1.80e-03
Smp_142120.1 SmLINC03443-IBu 0.86 2.68e-05 5.00e-04
Smp_142460.1 SmLINC03443-IBu 0.95 2.17e-08 3.60e-06
Smp_143450.1 SmLINC03443-IBu 0.93 4.31e-07 2.83e-05
Smp_145100.1 SmLINC03443-IBu 0.85 3.92e-05 7.00e-04
Smp_148570.1 SmLINC03443-IBu 0.87 1.94e-05 4.00e-04
Smp_148840.1 SmLINC03443-IBu 0.87 1.77e-05 4.00e-04
Smp_149750.1 SmLINC03443-IBu 0.83 1.00e-04 1.50e-03
Smp_157750.1 SmLINC03443-IBu 0.87 1.86e-05 4.00e-04
Smp_158310.1 SmLINC03443-IBu 0.82 1.00e-04 1.90e-03
Smp_159350.1 SmLINC03443-IBu 0.89 6.40e-06 1.00e-04
Smp_161230.1 SmLINC03443-IBu 0.90 2.64e-06 1.00e-04
Smp_164180.1 SmLINC03443-IBu 0.93 4.89e-07 3.10e-05
Smp_164270.1 SmLINC03443-IBu 0.95 2.02e-08 3.44e-06
Smp_171540.2 SmLINC03443-IBu 0.83 1.00e-04 1.50e-03
Smp_171610.1 SmLINC03443-IBu 0.81 2.00e-04 2.60e-03
Smp_172460.1 SmLINC03443-IBu 0.82 1.00e-04 2.00e-03
Smp_176230.2 SmLINC03443-IBu 0.91 2.20e-06 9.00e-05
Smp_179390.1 SmLINC03443-IBu 0.81 1.00e-04 2.30e-03
Smp_179670.1 SmLINC03443-IBu 0.94 1.66e-07 1.46e-05
Smp_193650.1 SmLINC03443-IBu 0.85 5.81e-05 9.00e-04
Smp_193700.1 SmLINC03443-IBu 0.91 1.85e-06 7.95e-05
Smp_193990.1 SmLINC03443-IBu 0.89 7.69e-06 2.00e-04
Smp_196680.1 SmLINC03443-IBu 0.88 1.44e-05 3.00e-04
Smp_200480.1 SmLINC03443-IBu 0.80 3.00e-04 3.40e-03
Smp_200600.1 SmLINC03443-IBu 0.98 7.45e-11 8.84e-08
Smp_201230.1 SmLINC03443-IBu 0.98 2.74e-11 4.71e-08
Smp_202030.1 SmLINC03443-IBu 0.89 5.17e-06 1.00e-04
Smp_202230.1 SmLINC03443-IBu 0.91 2.37e-06 9.48e-05
Smp_202560.1 SmLINC03443-IBu 0.84 8.40e-05 1.20e-03
Smp_202720.1 SmLINC03443-IBu 0.88 1.07e-05 2.00e-04
Smp_202990.1 SmLINC03443-IBu 0.91 2.20e-06 9.00e-05
Smp_203550.1 SmLINC03443-IBu 0.89 4.88e-06 1.00e-04
Smp_203820.1 SmLINC03443-IBu 0.81 2.00e-04 2.70e-03
Smp_203990.1 SmLINC03443-IBu 0.88 1.35e-05 3.00e-04
Smp_204820.1 SmLINC03443-IBu 0.92 1.10e-06 5.51e-05
Smp_204830.1 SmLINC03443-IBu 0.93 3.39e-07 2.39e-05
Smp_204950.1 SmLINC03443-IBu 0.81 2.00e-04 2.40e-03
Smp_205000.1 SmLINC03443-IBu 0.81 1.00e-04 2.30e-03
Smp_205030.1 SmLINC03443-IBu 0.85 4.06e-05 7.00e-04
Smp_205220.1 SmLINC03443-IBu 0.95 2.50e-08 3.97e-06
Smp_205840.1 SmLINC03443-IBu 0.82 1.00e-04 2.00e-03
Smp_212350.1 SmLINC03443-IBu 0.87 1.62e-05 3.00e-04
Fig. S5 for SmLINC03443-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC03443-IBu 0.91 2.20e-06 9.31e-05
Smp_193700.1 SmLINC03443-IBu 0.91 1.85e-06 8.24e-05