Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03433-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:17473953-17485573 - Strand: -


Fig. S5 for SmLINC03433-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03433-IBu 0 -0.55 -0.75 2.24 3.56
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_004780.3 0 8.47 8.56 12.10 13.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC03433-IBu 0.95 1.63e-08 3.17e-06
Smp_050350.3 SmLINC03433-IBu 0.92 1.16e-06 5.93e-05
Smp_094050.1 SmLINC03433-IBu 0.92 1.10e-06 5.72e-05
Smp_095410.1 SmLINC03433-IBu 0.90 4.46e-06 1.00e-04
Smp_140720.1 SmLINC03433-IBu 0.90 4.31e-06 1.00e-04
Smp_192780.1 SmLINC03433-IBu 0.94 1.83e-07 1.63e-05