Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03406-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:14447972-14449850 - Strand: +


Fig. 6A for SmLINC03406-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_200770.1 0 1.89 0.38 -8.15 -8.15
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55
Smp_202580.1 0 1.24 0.71 -2.72 -5.55
Smp_148570.1 0 2.59 1.60 -3.08 -5.21
Smp_000250.1 0 2.54 -1.10 -4.67 -4.67
Smp_027010.1 0 1.13 0.23 -1.74 -4.63
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_017080.3 0 1.61 -1.79 -3.44 -4.38
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_097020.1 0 2.16 -2.18 -9.25 -3.98
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_205840.1 0 0.97 0.46 -4.31 -2.31
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_202160.1 0 2.79 -1.17 -2.66 -1.06
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_136240.5 0 8.50 0.00 0.00 0.00
Smp_129930.1 0 7.26 0.00 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_204950.1 0 5.97 5.20 0.00 0.00
Smp_204190.1 0 3.21 -3.16 -0.75 1.19
Smp_201000.1 0 6.84 0.00 2.13 2.38
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
Smp_139700.1 0 6.89 4.15 2.03 5.39
Smp_039640.1 0 9.69 9.38 7.53 8.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000250.1 SmLINC03406-IBu 0.81 2.00e-04 2.50e-03
Smp_017080.3 SmLINC03406-IBu 0.80 2.00e-04 2.80e-03
Smp_021460.1 SmLINC03406-IBu 0.82 1.00e-04 2.10e-03
Smp_027010.1 SmLINC03406-IBu 0.80 2.00e-04 2.80e-03
Smp_035020.1 SmLINC03406-IBu 0.87 2.19e-05 4.00e-04
Smp_039640.1 SmLINC03406-IBu 0.82 1.00e-04 2.00e-03
Smp_049300.3 SmLINC03406-IBu 0.84 6.07e-05 9.00e-04
Smp_079280.1 SmLINC03406-IBu 0.84 8.08e-05 1.20e-03
Smp_097020.1 SmLINC03406-IBu 0.80 2.00e-04 2.70e-03
Smp_103140.1 SmLINC03406-IBu 0.82 1.00e-04 2.00e-03
Smp_106930.1 SmLINC03406-IBu 0.85 4.45e-05 7.00e-04
Smp_129930.1 SmLINC03406-IBu 0.81 2.00e-04 2.40e-03
Smp_136240.5 SmLINC03406-IBu 0.82 1.00e-04 1.90e-03
Smp_139700.1 SmLINC03406-IBu 0.84 7.15e-05 1.10e-03
Smp_143450.1 SmLINC03406-IBu 0.91 1.49e-06 6.84e-05
Smp_145100.1 SmLINC03406-IBu 0.89 6.94e-06 2.00e-04
Smp_148570.1 SmLINC03406-IBu 0.80 3.00e-04 3.20e-03
Smp_148840.1 SmLINC03406-IBu 0.84 7.27e-05 1.10e-03
Smp_149750.1 SmLINC03406-IBu 0.83 1.00e-04 1.50e-03
Smp_164270.1 SmLINC03406-IBu 0.85 5.95e-05 9.00e-04
Smp_179390.1 SmLINC03406-IBu 0.83 9.74e-05 1.30e-03
Smp_196680.1 SmLINC03406-IBu 0.84 6.19e-05 9.00e-04
Smp_200600.1 SmLINC03406-IBu 0.83 9.51e-05 1.30e-03
Smp_200770.1 SmLINC03406-IBu 0.82 1.00e-04 2.10e-03
Smp_201000.1 SmLINC03406-IBu 0.85 5.88e-05 9.00e-04
Smp_201230.1 SmLINC03406-IBu 0.87 2.17e-05 4.00e-04
Smp_202160.1 SmLINC03406-IBu 0.82 1.00e-04 2.00e-03
Smp_202560.1 SmLINC03406-IBu 0.88 1.36e-05 3.00e-04
Smp_202580.1 SmLINC03406-IBu 0.83 1.00e-04 1.50e-03
Smp_202720.1 SmLINC03406-IBu 0.82 1.00e-04 1.90e-03
Smp_203550.1 SmLINC03406-IBu 0.81 2.00e-04 2.60e-03
Smp_204190.1 SmLINC03406-IBu 0.83 9.72e-05 1.30e-03
Smp_204950.1 SmLINC03406-IBu 0.83 1.00e-04 1.40e-03
Smp_205000.1 SmLINC03406-IBu 0.88 1.48e-05 3.00e-04
Smp_205220.1 SmLINC03406-IBu 0.80 2.00e-04 2.90e-03
Smp_205840.1 SmLINC03406-IBu 0.80 3.00e-04 3.30e-03