Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03375-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:13628736-13630005 - Strand: +


Fig. S5 for SmLINC03375-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03375-IBu 0 0.00 1.47 5.71 7.92
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC03375-IBu 0.93 3.93e-07 2.78e-05
Smp_007950.1 SmLINC03375-IBu 0.95 3.51e-08 5.31e-06
Smp_016490.2 SmLINC03375-IBu 0.94 7.00e-08 8.49e-06
Smp_028870.1 SmLINC03375-IBu 0.96 1.30e-08 2.72e-06
Smp_083430.1 SmLINC03375-IBu 0.95 5.52e-08 7.22e-06
Smp_085180.1 SmLINC03375-IBu 0.97 5.04e-10 3.28e-07
Smp_102780.1 SmLINC03375-IBu 0.95 2.15e-08 3.81e-06
Smp_123880.1 SmLINC03375-IBu 0.96 4.38e-09 1.32e-06
Smp_130100.1 SmLINC03375-IBu 0.93 5.15e-07 3.35e-05
Smp_131410.1 SmLINC03375-IBu 0.96 1.06e-08 2.37e-06
Smp_131490.1 SmLINC03375-IBu 0.97 1.34e-09 6.16e-07
Smp_136730.1 SmLINC03375-IBu 0.92 9.71e-07 5.22e-05
Smp_137700.1 SmLINC03375-IBu 0.91 1.53e-06 7.22e-05
Smp_137720.1 SmLINC03375-IBu 0.97 4.64e-10 3.11e-07
Smp_137810.1 SmLINC03375-IBu 0.91 1.34e-06 6.58e-05
Smp_139160.1 SmLINC03375-IBu 0.92 7.86e-07 4.50e-05
Smp_139240.1 SmLINC03375-IBu 0.95 4.47e-08 6.26e-06
Smp_155570.1 SmLINC03375-IBu 0.93 3.29e-07 2.46e-05
Smp_159650.1 SmLINC03375-IBu 0.94 8.37e-08 9.58e-06
Smp_162320.1 SmLINC03375-IBu 0.96 1.14e-08 2.49e-06
Smp_163700.1 SmLINC03375-IBu 0.96 6.29e-09 1.68e-06
Smp_164320.1 SmLINC03375-IBu 0.97 1.65e-09 7.04e-07
Smp_181070.1 SmLINC03375-IBu 0.91 1.24e-06 6.22e-05
Smp_187140.1 SmLINC03375-IBu 0.95 4.11e-08 5.91e-06
Smp_194380.1 SmLINC03375-IBu 0.95 2.23e-08 3.91e-06
Smp_194910.1 SmLINC03375-IBu 0.94 1.32e-07 1.31e-05
Smp_196830.1 SmLINC03375-IBu 0.92 1.15e-06 5.90e-05
Smp_202610.1 SmLINC03375-IBu 0.95 2.41e-08 4.12e-06
Smp_203030.1 SmLINC03375-IBu 0.92 8.33e-07 4.69e-05
Smp_205580.1 SmLINC03375-IBu 0.96 1.27e-08 2.68e-06