Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03370-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:13203480-13205203 - Strand: -


Fig. S5 for SmLINC03370-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_033250.1 0 1.88 1.47 7.41 14.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC03370-IBu 0.97 2.23e-09 8.55e-07
Smp_000410.1 SmLINC03370-IBu 0.96 2.89e-09 1.01e-06
Smp_000420.1 SmLINC03370-IBu 0.98 3.47e-12 1.43e-08
Smp_033250.1 SmLINC03370-IBu 0.97 2.18e-10 1.92e-07
Smp_058160.1 SmLINC03370-IBu 0.95 1.57e-08 3.09e-06
Smp_077920.1 SmLINC03370-IBu 0.97 2.76e-10 2.23e-07
Smp_130970.1 SmLINC03370-IBu 0.96 1.44e-08 2.91e-06
Smp_131110.2 SmLINC03370-IBu 0.99 4.04e-14 9.36e-10
Smp_144440.1 SmLINC03370-IBu 0.97 1.80e-10 1.69e-07
Smp_155310.1 SmLINC03370-IBu 0.98 9.01e-11 1.09e-07
Smp_155310.2 SmLINC03370-IBu 0.94 7.73e-08 9.07e-06
Smp_175560.1 SmLINC03370-IBu 0.98 3.00e-12 1.30e-08
Smp_191910.1 SmLINC03370-IBu 0.98 5.67e-11 8.15e-08