Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03363-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:13167014-13182679 - Strand: +


Fig. S5 for SmLINC03363-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
SmLINC03363-IBu 0 3.48 -0.10 -1.02 0.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185680.1 SmLINC03363-IBu 0.96 1.09e-08 2.42e-06
Smp_185830.1 SmLINC03363-IBu 0.95 2.85e-08 4.62e-06
Smp_204360.1 SmLINC03363-IBu 0.91 1.57e-06 7.35e-05