Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03289-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:10103402-10104051 - Strand: -


Fig. S5 for SmLINC03289-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03289-IBu 0 -4.44 -4.49 -1.35 3.18
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC03289-IBu 0.91 2.32e-06 9.65e-05
Smp_041540.1 SmLINC03289-IBu 0.91 1.21e-06 6.12e-05
Smp_070540.1 SmLINC03289-IBu 0.94 6.75e-08 8.28e-06
Smp_105450.1 SmLINC03289-IBu 0.95 5.30e-08 7.03e-06
Smp_105450.2 SmLINC03289-IBu 0.92 1.06e-06 5.56e-05
Smp_126340.1 SmLINC03289-IBu 0.96 3.23e-09 1.08e-06
Smp_136730.1 SmLINC03289-IBu 0.93 1.96e-07 1.71e-05
Smp_139160.1 SmLINC03289-IBu 0.90 4.46e-06 1.00e-04
Smp_139240.1 SmLINC03289-IBu 0.91 1.57e-06 7.35e-05
Smp_163700.1 SmLINC03289-IBu 0.90 3.79e-06 1.00e-04
Smp_187140.1 SmLINC03289-IBu 0.90 3.66e-06 1.00e-04
Smp_194380.1 SmLINC03289-IBu 0.91 2.16e-06 9.20e-05
Smp_194910.1 SmLINC03289-IBu 0.90 3.68e-06 1.00e-04
Smp_205580.1 SmLINC03289-IBu 0.90 3.82e-06 1.00e-04