Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03227-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:8487532-8491369 - Strand: -


Fig. S5 for SmLINC03227-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_113660.1 0 -1.62 -1.17 -11.97 -11.97
SmLINC03227-IBu 0 -1.25 0.94 -11.22 -11.22
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032120.1 SmLINC03227-IBu 0.95 1.96e-08 3.59e-06
Smp_062070.1 SmLINC03227-IBu 0.90 4.57e-06 1.00e-04
Smp_084940.2 SmLINC03227-IBu 0.90 2.95e-06 1.00e-04
Smp_113660.1 SmLINC03227-IBu 0.91 1.77e-06 8.00e-05
Smp_159070.3 SmLINC03227-IBu 0.94 8.00e-08 9.29e-06
Smp_160410.1 SmLINC03227-IBu 0.92 8.12e-07 4.61e-05