Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03224-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:8487532-8491352 - Strand: -


Fig. S5 for SmLINC03224-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11
SmLINC03224-IBu 0 9.29 0.00 10.55 11.51
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 SmLINC03224-IBu 0.91 1.56e-06 7.32e-05
Smp_050350.3 SmLINC03224-IBu 0.90 3.62e-06 1.00e-04
Smp_154010.1 SmLINC03224-IBu -0.91 1.30e-06 6.43e-05