Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03132-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:4950781-4957956 - Strand: -


Fig. S5 for SmLINC03132-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC03132-IBu 0.98 3.06e-11 5.55e-08
Smp_021340.3 SmLINC03132-IBu 0.97 2.12e-09 8.28e-07
Smp_032120.1 SmLINC03132-IBu 0.97 1.79e-09 7.39e-07
Smp_034840.1 SmLINC03132-IBu 0.98 2.31e-11 4.65e-08
Smp_036270.3 SmLINC03132-IBu 0.94 1.37e-07 1.34e-05
Smp_059340.3 SmLINC03132-IBu 0.96 9.94e-09 2.27e-06
Smp_059530.1 SmLINC03132-IBu 0.96 1.23e-08 2.62e-06
Smp_062070.1 SmLINC03132-IBu 0.96 7.14e-09 1.82e-06
Smp_062610.2 SmLINC03132-IBu 0.94 1.90e-07 1.68e-05
Smp_063650.3 SmLINC03132-IBu 0.91 1.37e-06 6.69e-05
Smp_083380.2 SmLINC03132-IBu 0.98 1.44e-11 3.46e-08
Smp_084940.2 SmLINC03132-IBu 0.99 1.66e-13 2.18e-09
Smp_098370.1 SmLINC03132-IBu 0.96 3.69e-09 1.18e-06
Smp_099160.4 SmLINC03132-IBu 0.94 1.10e-07 1.16e-05
Smp_100130.2 SmLINC03132-IBu 0.90 2.87e-06 1.00e-04
Smp_103540.1 SmLINC03132-IBu 0.98 2.25e-11 4.56e-08
Smp_141630.4 SmLINC03132-IBu 0.93 1.97e-07 1.72e-05
Smp_159070.3 SmLINC03132-IBu 0.93 4.32e-07 2.97e-05
Smp_159150.1 SmLINC03132-IBu 0.95 1.79e-08 3.38e-06