Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03116-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:4390604-4393088 - Strand: -


Fig. 7A S3 for SmLINC03116-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_109340.1 SmLINC03116-IBu 0.54 3.73e-02 9.00e-02
Smp_149750.1 SmLINC03116-IBu 0.65 7.50e-03 2.80e-02
Fig. 6A for SmLINC03116-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_203400.1 0 1.56 0.55 -7.76 -4.64
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_024360.2 0 3.66 2.97 0.48 -1.11
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005080.1 SmLINC03116-IBu 0.81 1.00e-04 2.20e-03
Smp_017080.1 SmLINC03116-IBu 0.80 2.00e-04 2.80e-03
Smp_021460.1 SmLINC03116-IBu 0.84 6.71e-05 1.00e-03
Smp_024360.2 SmLINC03116-IBu 0.82 1.00e-04 1.70e-03
Smp_032280.1 SmLINC03116-IBu 0.93 4.41e-07 2.88e-05
Smp_035020.1 SmLINC03116-IBu 0.87 1.55e-05 3.00e-04
Smp_037610.1 SmLINC03116-IBu 0.84 6.14e-05 9.00e-04
Smp_038980.2 SmLINC03116-IBu 0.93 3.77e-07 2.58e-05
Smp_046690.1 SmLINC03116-IBu 0.90 3.67e-06 1.00e-04
Smp_048060.1 SmLINC03116-IBu 0.96 3.45e-09 1.05e-06
Smp_048160.1 SmLINC03116-IBu 0.83 1.00e-04 1.60e-03
Smp_068270.3 SmLINC03116-IBu 0.80 2.00e-04 3.00e-03
Smp_075640.2 SmLINC03116-IBu 0.86 2.58e-05 5.00e-04
Smp_079280.1 SmLINC03116-IBu 0.81 2.00e-04 2.50e-03
Smp_084210.1 SmLINC03116-IBu 0.91 1.20e-06 5.86e-05
Smp_093740.2 SmLINC03116-IBu 0.82 1.00e-04 2.00e-03
Smp_103140.1 SmLINC03116-IBu 0.87 1.78e-05 4.00e-04
Smp_123250.1 SmLINC03116-IBu 0.96 4.93e-09 1.33e-06
Smp_128400.1 SmLINC03116-IBu 0.82 1.00e-04 1.80e-03
Smp_133830.1 SmLINC03116-IBu 0.93 2.58e-07 1.98e-05
Smp_138890.1 SmLINC03116-IBu 0.87 2.26e-05 4.00e-04
Smp_140390.1 SmLINC03116-IBu 0.89 5.81e-06 1.00e-04
Smp_142120.1 SmLINC03116-IBu 0.96 2.52e-09 8.61e-07
Smp_142460.1 SmLINC03116-IBu 0.94 1.08e-07 1.08e-05
Smp_143450.1 SmLINC03116-IBu 0.89 6.29e-06 1.00e-04
Smp_145100.1 SmLINC03116-IBu 0.82 1.00e-04 1.70e-03
Smp_148840.1 SmLINC03116-IBu 0.82 1.00e-04 2.10e-03
Smp_152770.1 SmLINC03116-IBu 0.93 3.89e-07 2.64e-05
Smp_159350.1 SmLINC03116-IBu 0.85 5.47e-05 9.00e-04
Smp_161230.1 SmLINC03116-IBu 0.84 6.81e-05 1.00e-03
Smp_164170.1 SmLINC03116-IBu 0.89 5.58e-06 1.00e-04
Smp_164180.1 SmLINC03116-IBu 0.98 4.83e-12 1.59e-08
Smp_164270.1 SmLINC03116-IBu 0.85 4.21e-05 7.00e-04
Smp_171540.2 SmLINC03116-IBu 0.92 9.47e-07 4.93e-05
Smp_171610.1 SmLINC03116-IBu 0.80 3.00e-04 3.20e-03
Smp_172460.1 SmLINC03116-IBu 0.95 4.18e-08 5.65e-06
Smp_176230.2 SmLINC03116-IBu 0.86 3.58e-05 6.00e-04
Smp_179390.1 SmLINC03116-IBu 0.86 3.47e-05 6.00e-04
Smp_179670.1 SmLINC03116-IBu 0.97 1.21e-09 5.34e-07
Smp_187410.1 SmLINC03116-IBu 0.93 4.97e-07 3.13e-05
Smp_193650.1 SmLINC03116-IBu 0.89 6.71e-06 1.00e-04
Smp_193700.1 SmLINC03116-IBu 0.89 6.04e-06 1.00e-04
Smp_193990.1 SmLINC03116-IBu 0.87 1.59e-05 3.00e-04
Smp_195090.1 SmLINC03116-IBu 0.85 4.45e-05 7.00e-04
Smp_196000.1 SmLINC03116-IBu 0.81 2.00e-04 2.40e-03
Smp_196680.1 SmLINC03116-IBu 0.82 1.00e-04 2.10e-03
Smp_200600.1 SmLINC03116-IBu 0.90 4.16e-06 1.00e-04
Smp_201230.1 SmLINC03116-IBu 0.89 6.54e-06 1.00e-04
Smp_202030.1 SmLINC03116-IBu 0.96 8.67e-09 1.94e-06
Smp_202230.1 SmLINC03116-IBu 0.98 1.52e-10 1.39e-07
Smp_202720.1 SmLINC03116-IBu 0.85 4.78e-05 8.00e-04
Smp_202780.1 SmLINC03116-IBu 0.90 3.97e-06 1.00e-04
Smp_202840.1 SmLINC03116-IBu 0.89 6.37e-06 1.00e-04
Smp_202990.1 SmLINC03116-IBu 0.98 1.04e-11 2.56e-08
Smp_203400.1 SmLINC03116-IBu 0.85 3.96e-05 7.00e-04
Smp_203550.1 SmLINC03116-IBu 0.95 3.74e-08 5.23e-06
Smp_203820.1 SmLINC03116-IBu 0.95 3.44e-08 4.94e-06
Smp_204820.1 SmLINC03116-IBu 0.83 1.00e-04 1.50e-03
Smp_204830.1 SmLINC03116-IBu 0.88 9.32e-06 2.00e-04
Smp_205030.1 SmLINC03116-IBu 0.85 5.01e-05 8.00e-04
Smp_205220.1 SmLINC03116-IBu 0.87 1.80e-05 4.00e-04
Smp_206300.1 SmLINC03116-IBu 0.92 5.34e-07 3.29e-05
Smp_212350.1 SmLINC03116-IBu 0.86 2.72e-05 5.00e-04