Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03103-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:3947984-3949018 - Strand: -


Fig. S5 for SmLINC03103-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03103-IBu 0 0.00 0.00 7.82 8.26
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 SmLINC03103-IBu 0.90 3.60e-06 1.00e-04
Smp_033260.1 SmLINC03103-IBu 0.92 6.35e-07 3.88e-05
Smp_079420.1 SmLINC03103-IBu 0.91 1.37e-06 6.67e-05
Smp_123550.1 SmLINC03103-IBu 0.95 3.43e-08 5.23e-06
Smp_137000.2 SmLINC03103-IBu 0.90 2.92e-06 1.00e-04
Smp_156930.1 SmLINC03103-IBu 0.97 1.09e-09 5.38e-07
Smp_166860.1 SmLINC03103-IBu 0.95 3.95e-08 5.75e-06
Smp_172960.1 SmLINC03103-IBu 0.91 2.34e-06 9.73e-05
Smp_177580.1 SmLINC03103-IBu 0.94 1.66e-07 1.53e-05
Smp_194860.1 SmLINC03103-IBu 0.93 5.06e-07 3.31e-05
Smp_201910.1 SmLINC03103-IBu 0.95 4.31e-08 6.11e-06
Smp_203090.1 SmLINC03103-IBu 0.94 9.31e-08 1.03e-05