Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03086-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:3099837-3101440 - Strand: -


Fig. S5 for SmLINC03086-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC03086-IBu 0 0.21 -1.77 -4.72 -4.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC03086-IBu 0.91 1.23e-06 6.20e-05
Smp_111640.1 SmLINC03086-IBu 0.92 6.43e-07 3.91e-05
Smp_125070.1 SmLINC03086-IBu 0.91 1.26e-06 6.30e-05
Smp_176230.2 SmLINC03086-IBu 0.90 2.94e-06 1.00e-04
Smp_184710.1 SmLINC03086-IBu 0.93 4.16e-07 2.89e-05