Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC03058-IBu Data

Chromosome: Chr 4 - Coordinate: Chr 4:1274681-1277533 - Strand: -


Fig. S5 for SmLINC03058-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03058-IBu 0 3.38 4.99 6.76 6.26
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_020760.2 0 9.23 8.40 12.26 12.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC03058-IBu 0.90 3.08e-06 1.00e-04
Smp_045200.1 SmLINC03058-IBu 0.90 2.51e-06 1.00e-04
Smp_118560.1 SmLINC03058-IBu 0.91 1.67e-06 7.66e-05
Smp_125200.1 SmLINC03058-IBu 0.91 1.23e-06 6.20e-05