Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02987-IBu Data

Chromosome: Chr 3.unplaced.SC 0124 - Coordinate: Chr 3.unplaced.SC 0124:139065-153958 - Strand: -


Fig. S5 for SmLINC02987-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
SmLINC02987-IBu 0 0.03 -0.66 -5.30 -5.63
Smp_038870.2 0 -10.39 -10.39 1.75 2.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033050.2 SmLINC02987-IBu 0.95 2.32e-08 4.01e-06
Smp_038870.2 SmLINC02987-IBu -0.92 1.05e-06 5.55e-05
Smp_184180.1 SmLINC02987-IBu 0.90 3.35e-06 1.00e-04
Smp_212510.1 SmLINC02987-IBu 0.95 3.96e-08 5.76e-06