Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02986-IBu Data

Chromosome: Chr 3.unplaced.SC 0124 - Coordinate: Chr 3.unplaced.SC 0124:102174-105710 - Strand: +


Fig. S5 for SmLINC02986-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02986-IBu 0 2.14 2.95 7.51 7.43
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02986-IBu 0.93 5.09e-07 3.32e-05
Smp_045200.1 SmLINC02986-IBu 0.94 1.24e-07 1.25e-05
Smp_058660.1 SmLINC02986-IBu 0.97 5.33e-10 3.40e-07
Smp_068270.1 SmLINC02986-IBu 0.90 2.58e-06 1.00e-04
Smp_082580.1 SmLINC02986-IBu 0.92 6.79e-07 4.06e-05
Smp_084270.1 SmLINC02986-IBu 0.91 2.04e-06 8.84e-05
Smp_118560.1 SmLINC02986-IBu 0.90 3.26e-06 1.00e-04
Smp_123200.1 SmLINC02986-IBu 0.90 2.55e-06 1.00e-04
Smp_125210.1 SmLINC02986-IBu 0.93 2.73e-07 2.16e-05
Smp_134960.1 SmLINC02986-IBu 0.92 7.10e-07 4.19e-05
Smp_137320.1 SmLINC02986-IBu 0.97 2.21e-10 1.94e-07
Smp_141680.1 SmLINC02986-IBu 0.95 4.50e-08 6.29e-06
Smp_145400.1 SmLINC02986-IBu 0.96 2.38e-09 8.91e-07
Smp_150980.2 SmLINC02986-IBu 0.90 4.80e-06 1.00e-04
Smp_151120.1 SmLINC02986-IBu 0.94 8.94e-08 1.00e-05
Smp_164550.1 SmLINC02986-IBu 0.90 2.58e-06 1.00e-04
Smp_170280.1 SmLINC02986-IBu 0.95 1.72e-08 3.28e-06
Smp_172480.1 SmLINC02986-IBu 0.94 1.14e-07 1.18e-05
Smp_172960.1 SmLINC02986-IBu 0.93 3.51e-07 2.57e-05
Smp_194860.1 SmLINC02986-IBu 0.92 1.15e-06 5.91e-05
Smp_194960.1 SmLINC02986-IBu 0.91 2.01e-06 8.75e-05
Smp_200750.1 SmLINC02986-IBu 0.93 4.20e-07 2.91e-05
Smp_205270.1 SmLINC02986-IBu 0.95 3.25e-08 5.04e-06