Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02981-IBu Data

Chromosome: Chr 3.unplaced.SC 0105 - Coordinate: Chr 3.unplaced.SC 0105:618869-620618 - Strand: -


Fig. S5 for SmLINC02981-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02981-IBu 0 5.05 5.74 0.00 0.00
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC02981-IBu 0.90 4.48e-06 1.00e-04
Smp_021340.3 SmLINC02981-IBu 0.93 4.03e-07 2.82e-05
Smp_033950.3 SmLINC02981-IBu 0.93 3.67e-07 2.65e-05
Smp_040970.3 SmLINC02981-IBu 0.96 9.18e-09 2.15e-06
Smp_098370.1 SmLINC02981-IBu 0.93 2.56e-07 2.07e-05
Smp_099160.4 SmLINC02981-IBu 0.92 7.86e-07 4.50e-05