Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02978-IBu Data

Chromosome: Chr 3.unplaced.SC 0105 - Coordinate: Chr 3.unplaced.SC 0105:239280-246880 - Strand: +


Fig. S5 for SmLINC02978-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC02978-IBu 0 -0.07 0.22 6.95 6.09
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC02978-IBu 0.95 3.60e-08 5.41e-06
Smp_014780.1 SmLINC02978-IBu 0.96 6.16e-09 1.65e-06
Smp_017610.1 SmLINC02978-IBu 0.93 2.18e-07 1.85e-05
Smp_020760.2 SmLINC02978-IBu 0.90 3.99e-06 1.00e-04
Smp_031040.1 SmLINC02978-IBu 0.94 1.88e-07 1.67e-05
Smp_034980.2 SmLINC02978-IBu 0.95 4.65e-08 6.43e-06
Smp_040970.2 SmLINC02978-IBu 0.90 4.27e-06 1.00e-04
Smp_045200.1 SmLINC02978-IBu 0.97 2.93e-10 2.32e-07
Smp_051210.3 SmLINC02978-IBu 0.91 1.47e-06 7.00e-05
Smp_056360.3 SmLINC02978-IBu 0.91 1.85e-06 8.25e-05
Smp_058140.3 SmLINC02978-IBu 0.93 3.05e-07 2.33e-05
Smp_058660.1 SmLINC02978-IBu 0.94 1.38e-07 1.35e-05
Smp_068270.1 SmLINC02978-IBu 0.97 5.23e-10 3.36e-07
Smp_081920.1 SmLINC02978-IBu 0.94 7.36e-08 8.78e-06
Smp_082580.1 SmLINC02978-IBu 0.98 3.24e-11 5.75e-08
Smp_084270.1 SmLINC02978-IBu 0.96 4.87e-09 1.42e-06
Smp_105730.1 SmLINC02978-IBu 0.96 3.02e-09 1.04e-06
Smp_118560.1 SmLINC02978-IBu 0.95 1.48e-08 2.97e-06
Smp_123200.1 SmLINC02978-IBu 0.94 1.16e-07 1.20e-05
Smp_125200.1 SmLINC02978-IBu 0.94 1.11e-07 1.16e-05
Smp_125210.1 SmLINC02978-IBu 0.97 3.53e-10 2.62e-07
Smp_128510.1 SmLINC02978-IBu 0.92 9.70e-07 5.22e-05
Smp_131840.1 SmLINC02978-IBu 0.97 3.09e-10 2.40e-07
Smp_134960.1 SmLINC02978-IBu 0.97 9.10e-10 4.80e-07
Smp_137320.1 SmLINC02978-IBu 0.94 1.21e-07 1.23e-05
Smp_141680.1 SmLINC02978-IBu 0.96 2.81e-09 9.92e-07
Smp_145400.1 SmLINC02978-IBu 0.93 2.41e-07 1.98e-05
Smp_150980.2 SmLINC02978-IBu 0.97 4.55e-10 3.08e-07
Smp_151120.1 SmLINC02978-IBu 0.94 8.78e-08 9.90e-06
Smp_154180.1 SmLINC02978-IBu 0.97 5.02e-10 3.27e-07
Smp_154190.1 SmLINC02978-IBu 0.99 1.46e-12 8.37e-09
Smp_159070.2 SmLINC02978-IBu 0.92 5.20e-07 3.37e-05
Smp_160360.1 SmLINC02978-IBu 0.96 7.86e-09 1.94e-06
Smp_163940.1 SmLINC02978-IBu 0.91 1.96e-06 8.58e-05
Smp_164550.1 SmLINC02978-IBu 0.98 2.87e-12 1.26e-08
Smp_170280.1 SmLINC02978-IBu 0.97 5.63e-10 3.52e-07
Smp_172480.1 SmLINC02978-IBu 0.97 3.53e-10 2.62e-07
Smp_172520.1 SmLINC02978-IBu 0.95 2.34e-08 4.03e-06
Smp_172960.1 SmLINC02978-IBu 0.91 1.85e-06 8.25e-05
Smp_175020.1 SmLINC02978-IBu 0.93 2.30e-07 1.91e-05
Smp_194960.1 SmLINC02978-IBu 0.98 1.57e-11 3.63e-08
Smp_194970.1 SmLINC02978-IBu 0.97 1.32e-09 6.09e-07
Smp_194980.1 SmLINC02978-IBu 0.95 5.71e-08 7.39e-06
Smp_197400.1 SmLINC02978-IBu 0.96 3.93e-09 1.23e-06
Smp_200750.1 SmLINC02978-IBu 0.95 4.29e-08 6.09e-06
Smp_203090.1 SmLINC02978-IBu 0.92 9.90e-07 5.30e-05
Smp_205270.1 SmLINC02978-IBu 0.98 7.78e-11 9.96e-08