Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02974-IBu Data

Chromosome: Chr 3.unplaced.SC 0083 - Coordinate: Chr 3.unplaced.SC 0083:1425697-1426799 - Strand: +


Fig. S5 for SmLINC02974-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC02974-IBu 0 4.39 7.22 4.18 3.33
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC02974-IBu 0.92 5.16e-07 3.36e-05
Smp_032120.1 SmLINC02974-IBu 0.92 7.12e-07 4.20e-05
Smp_062070.1 SmLINC02974-IBu 0.93 2.95e-07 2.28e-05
Smp_084940.2 SmLINC02974-IBu 0.92 1.00e-06 5.35e-05
Smp_098370.1 SmLINC02974-IBu 0.90 4.00e-06 1.00e-04
Smp_103540.1 SmLINC02974-IBu 0.91 2.41e-06 9.93e-05
Smp_138080.1 SmLINC02974-IBu 0.96 1.14e-08 2.50e-06
Smp_159070.3 SmLINC02974-IBu 0.95 5.07e-08 6.82e-06
Smp_159150.1 SmLINC02974-IBu 0.93 2.15e-07 1.83e-05