Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02929-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:27091578-27093617 - Strand: -


Fig. S5 for SmLINC02929-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC02929-IBu 0 1.28 1.36 4.28 4.99
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC02929-IBu -0.90 4.15e-06 1.00e-04
Smp_020760.2 SmLINC02929-IBu 0.92 1.07e-06 5.60e-05
Smp_024180.2 SmLINC02929-IBu 0.91 1.93e-06 8.49e-05
Smp_031040.1 SmLINC02929-IBu 0.91 1.30e-06 6.42e-05
Smp_033260.1 SmLINC02929-IBu 0.95 2.09e-08 3.74e-06
Smp_038870.2 SmLINC02929-IBu 0.93 3.17e-07 2.39e-05
Smp_040970.2 SmLINC02929-IBu 0.92 6.00e-07 3.73e-05
Smp_050350.3 SmLINC02929-IBu 0.96 1.18e-08 2.55e-06
Smp_052280.2 SmLINC02929-IBu 0.93 1.94e-07 1.71e-05
Smp_055340.2 SmLINC02929-IBu 0.95 3.88e-08 5.69e-06
Smp_056460.1 SmLINC02929-IBu 0.97 1.81e-09 7.47e-07
Smp_058660.1 SmLINC02929-IBu 0.90 2.94e-06 1.00e-04
Smp_079420.1 SmLINC02929-IBu 0.96 6.62e-09 1.73e-06
Smp_083990.2 SmLINC02929-IBu 0.92 8.18e-07 4.63e-05
Smp_094050.1 SmLINC02929-IBu 0.92 9.25e-07 5.05e-05
Smp_095410.1 SmLINC02929-IBu 0.94 1.55e-07 1.46e-05
Smp_137000.2 SmLINC02929-IBu 0.96 9.76e-09 2.24e-06
Smp_137810.1 SmLINC02929-IBu 0.91 1.77e-06 7.99e-05
Smp_145400.1 SmLINC02929-IBu 0.93 2.61e-07 2.09e-05
Smp_151120.1 SmLINC02929-IBu 0.90 3.84e-06 1.00e-04
Smp_155570.1 SmLINC02929-IBu 0.90 3.21e-06 1.00e-04
Smp_156930.1 SmLINC02929-IBu 0.92 8.37e-07 4.70e-05
Smp_160090.2 SmLINC02929-IBu 0.92 8.07e-07 4.58e-05
Smp_169670.1 SmLINC02929-IBu 0.93 4.26e-07 2.94e-05
Smp_172480.1 SmLINC02929-IBu 0.90 2.53e-06 1.00e-04
Smp_172960.1 SmLINC02929-IBu 0.94 1.08e-07 1.14e-05
Smp_192780.1 SmLINC02929-IBu 0.94 1.71e-07 1.56e-05
Smp_194860.1 SmLINC02929-IBu 0.96 1.00e-08 2.29e-06
Smp_203090.1 SmLINC02929-IBu 0.91 1.22e-06 6.16e-05