Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02888-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:20405768-20406553 - Strand: +


Fig. 6A for SmLINC02888-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_120640.2 0 -1.11 -1.94 -7.48 -9.70
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_194000.1 0 -1.48 -1.97 -6.64 -8.23
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_099160.2 0 -1.87 -2.30 -5.96 -7.41
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04
Smp_204480.1 0 -1.73 -7.02 -4.14 -7.02
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_189290.1 0 -1.39 -2.16 -5.67 -6.85
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_187740.1 0 -1.94 -3.53 -5.17 -6.76
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_179110.1 0 -1.09 -2.38 -5.56 -6.62
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52
Smp_052230.1 0 -1.19 -3.35 -5.82 -6.52
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_132210.1 0 -1.38 -3.96 -4.62 -6.30
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_201990.1 0 -0.43 -3.29 -5.97 -5.97
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90
Smp_205800.1 0 -0.55 -2.89 -6.44 -5.86
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
Smp_154250.1 0 -0.91 -2.50 -5.33 -5.48
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22
Smp_212390.1 0 -0.91 -2.72 -3.77 -5.20
Smp_060900.2 0 -2.06 -2.01 -4.40 -5.14
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_212280.1 0 -0.76 -4.70 -3.16 -4.81
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_147090.1 0 -1.07 -2.38 -5.49 -4.74
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_077380.1 0 -1.50 -2.45 -4.87 -4.54
Smp_028990.1 0 -1.33 -2.19 -4.19 -4.50
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_164850.1 0 -2.43 -3.75 -2.48 -4.46
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_168950.1 0 -0.96 -1.82 -4.29 -4.36
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_095480.1 0 -0.60 -5.00 -4.31 -4.03
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_149200.2 0 -2.21 -4.97 -3.95 -3.74
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_029930.1 0 -2.45 -5.79 -4.41 -2.49
Smp_129920.1 0 -0.74 -3.51 -5.41 -2.45
Smp_042280.1 0 -0.52 0.36 2.84 3.46
Smp_167000.1 0 0.21 1.53 3.39 4.01
Smp_088950.1 0 -0.37 2.54 3.00 4.07
Smp_024390.3 0 0.14 1.58 2.91 4.12
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_154460.1 0 0.18 2.05 3.56 4.51
Smp_007550.1 0 0.03 3.98 3.90 4.57
Smp_213620.1 0 0.42 2.27 3.80 4.65
Smp_052470.1 0 0.01 2.21 3.78 5.14
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_153540.1 0 -0.31 2.57 4.90 5.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002930.1 SmLINC02888-IBu 0.81 2.00e-04 2.30e-03
Smp_003770.1 SmLINC02888-IBu 0.91 2.05e-06 8.56e-05
Smp_005860.1 SmLINC02888-IBu 0.84 7.05e-05 1.00e-03
Smp_005860.3 SmLINC02888-IBu 0.82 1.00e-04 2.00e-03
Smp_006560.1 SmLINC02888-IBu 0.87 1.78e-05 4.00e-04
Smp_007550.1 SmLINC02888-IBu -0.80 2.00e-04 2.90e-03
Smp_014400.3 SmLINC02888-IBu 0.93 2.47e-07 1.92e-05
Smp_014400.5 SmLINC02888-IBu 0.84 6.81e-05 1.00e-03
Smp_017290.4 SmLINC02888-IBu -0.83 1.00e-04 1.50e-03
Smp_018880.1 SmLINC02888-IBu 0.85 5.53e-05 9.00e-04
Smp_019750.2 SmLINC02888-IBu 0.87 2.27e-05 4.00e-04
Smp_021730.1 SmLINC02888-IBu 0.91 1.68e-06 7.42e-05
Smp_022430.1 SmLINC02888-IBu 0.86 3.92e-05 7.00e-04
Smp_024390.3 SmLINC02888-IBu -0.80 2.00e-04 2.80e-03
Smp_028990.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_028990.2 SmLINC02888-IBu 0.88 1.25e-05 3.00e-04
Smp_029930.1 SmLINC02888-IBu 0.81 2.00e-04 2.60e-03
Smp_030500.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_033610.1 SmLINC02888-IBu 0.86 3.75e-05 6.00e-04
Smp_035090.2 SmLINC02888-IBu 0.82 1.00e-04 2.10e-03
Smp_036250.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_038530.1 SmLINC02888-IBu 0.88 9.66e-06 2.00e-04
Smp_038560.6 SmLINC02888-IBu 0.82 1.00e-04 2.00e-03
Smp_041730.3 SmLINC02888-IBu 0.93 2.26e-07 1.80e-05
Smp_042160.1 SmLINC02888-IBu 0.91 2.43e-06 9.65e-05
Smp_042280.1 SmLINC02888-IBu -0.81 2.00e-04 2.50e-03
Smp_050830.1 SmLINC02888-IBu 0.87 2.37e-05 4.00e-04
Smp_052060.1 SmLINC02888-IBu 0.89 5.52e-06 1.00e-04
Smp_052230.1 SmLINC02888-IBu 0.95 6.00e-08 7.22e-06
Smp_052470.1 SmLINC02888-IBu -0.81 2.00e-04 2.60e-03
Smp_055210.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_057060.1 SmLINC02888-IBu 0.85 4.64e-05 8.00e-04
Smp_057790.1 SmLINC02888-IBu 0.83 9.21e-05 1.30e-03
Smp_060900.2 SmLINC02888-IBu 0.84 8.00e-05 1.20e-03
Smp_061870.1 SmLINC02888-IBu 0.90 4.20e-06 1.00e-04
Smp_061940.1 SmLINC02888-IBu 0.89 6.34e-06 1.00e-04
Smp_063090.1 SmLINC02888-IBu 0.81 1.00e-04 2.20e-03
Smp_072110.1 SmLINC02888-IBu 0.86 2.63e-05 5.00e-04
Smp_072190.1 SmLINC02888-IBu -0.85 5.61e-05 9.00e-04
Smp_074560.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_074570.1 SmLINC02888-IBu 0.91 1.92e-06 8.15e-05
Smp_077380.1 SmLINC02888-IBu 0.92 9.02e-07 4.76e-05
Smp_079220.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_083720.1 SmLINC02888-IBu 0.81 2.00e-04 2.40e-03
Smp_084400.4 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_085290.3 SmLINC02888-IBu 0.81 2.00e-04 2.70e-03
Smp_087250.1 SmLINC02888-IBu 0.82 1.00e-04 2.00e-03
Smp_088950.1 SmLINC02888-IBu -0.82 1.00e-04 2.00e-03
Smp_092320.1 SmLINC02888-IBu 0.86 3.13e-05 6.00e-04
Smp_095480.1 SmLINC02888-IBu 0.84 7.86e-05 1.10e-03
Smp_097750.1 SmLINC02888-IBu 0.84 8.33e-05 1.20e-03
Smp_099160.2 SmLINC02888-IBu 0.87 2.20e-05 4.00e-04
Smp_099420.1 SmLINC02888-IBu 0.85 5.41e-05 9.00e-04
Smp_099670.1 SmLINC02888-IBu 0.81 2.00e-04 2.40e-03
Smp_102670.1 SmLINC02888-IBu 0.88 1.02e-05 2.00e-04
Smp_104000.1 SmLINC02888-IBu -0.83 1.00e-04 1.40e-03
Smp_105610.1 SmLINC02888-IBu 0.83 9.33e-05 1.30e-03
Smp_106390.1 SmLINC02888-IBu 0.82 1.00e-04 2.10e-03
Smp_108050.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_109240.1 SmLINC02888-IBu 0.80 3.00e-04 3.30e-03
Smp_110400.3 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_113760.1 SmLINC02888-IBu 0.81 2.00e-04 2.30e-03
Smp_114910.1 SmLINC02888-IBu 0.80 3.00e-04 3.20e-03
Smp_120640.2 SmLINC02888-IBu 0.85 4.52e-05 7.00e-04
Smp_120920.3 SmLINC02888-IBu 0.86 2.75e-05 5.00e-04
Smp_125440.1 SmLINC02888-IBu 0.82 1.00e-04 1.70e-03
Smp_129920.1 SmLINC02888-IBu 0.85 4.78e-05 8.00e-04
Smp_132210.1 SmLINC02888-IBu 0.95 5.89e-08 7.13e-06
Smp_133310.1 SmLINC02888-IBu 0.91 1.47e-06 6.75e-05
Smp_133770.1 SmLINC02888-IBu 0.86 3.42e-05 6.00e-04
Smp_134410.1 SmLINC02888-IBu 0.81 1.00e-04 2.20e-03
Smp_135250.1 SmLINC02888-IBu 0.86 3.17e-05 6.00e-04
Smp_145340.1 SmLINC02888-IBu 0.87 1.69e-05 3.00e-04
Smp_145710.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_147090.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_148800.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_149200.2 SmLINC02888-IBu 0.88 1.29e-05 3.00e-04
Smp_149670.1 SmLINC02888-IBu 0.85 5.09e-05 8.00e-04
Smp_150690.2 SmLINC02888-IBu 0.82 1.00e-04 1.90e-03
Smp_152260.1 SmLINC02888-IBu 0.86 3.61e-05 6.00e-04
Smp_153240.1 SmLINC02888-IBu 0.85 5.01e-05 8.00e-04
Smp_153540.1 SmLINC02888-IBu -0.82 1.00e-04 2.00e-03
Smp_154020.1 SmLINC02888-IBu 0.86 2.94e-05 5.00e-04
Smp_154250.1 SmLINC02888-IBu 0.85 5.16e-05 8.00e-04
Smp_154460.1 SmLINC02888-IBu -0.83 1.00e-04 1.50e-03
Smp_155890.1 SmLINC02888-IBu 0.80 3.00e-04 3.10e-03
Smp_157310.1 SmLINC02888-IBu 0.87 1.64e-05 3.00e-04
Smp_159190.1 SmLINC02888-IBu 0.81 2.00e-04 2.50e-03
Smp_164850.1 SmLINC02888-IBu 0.80 2.00e-04 3.00e-03
Smp_166950.1 SmLINC02888-IBu 0.87 1.59e-05 3.00e-04
Smp_167000.1 SmLINC02888-IBu -0.84 7.92e-05 1.10e-03
Smp_168380.1 SmLINC02888-IBu 0.83 1.00e-04 1.50e-03
Smp_168950.1 SmLINC02888-IBu 0.87 2.02e-05 4.00e-04
Smp_169190.1 SmLINC02888-IBu 0.86 2.93e-05 5.00e-04
Smp_178240.1 SmLINC02888-IBu 0.86 2.88e-05 5.00e-04
Smp_179110.1 SmLINC02888-IBu 0.87 1.82e-05 4.00e-04
Smp_179270.1 SmLINC02888-IBu 0.84 6.71e-05 1.00e-03
Smp_179640.1 SmLINC02888-IBu 0.87 1.69e-05 3.00e-04
Smp_182770.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_183020.1 SmLINC02888-IBu 0.80 2.00e-04 2.80e-03
Smp_183020.6 SmLINC02888-IBu 0.80 2.00e-04 2.80e-03
Smp_183420.1 SmLINC02888-IBu 0.87 1.69e-05 3.00e-04
Smp_184460.1 SmLINC02888-IBu 0.84 8.72e-05 1.20e-03
Smp_184750.1 SmLINC02888-IBu 0.86 3.91e-05 7.00e-04
Smp_185180.1 SmLINC02888-IBu 0.84 8.23e-05 1.20e-03
Smp_185360.1 SmLINC02888-IBu 0.85 3.99e-05 7.00e-04
Smp_187740.1 SmLINC02888-IBu 0.89 5.66e-06 1.00e-04
Smp_189290.1 SmLINC02888-IBu 0.84 8.66e-05 1.20e-03
Smp_190320.1 SmLINC02888-IBu 0.80 2.00e-04 3.00e-03
Smp_192880.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_194000.1 SmLINC02888-IBu 0.84 7.68e-05 1.10e-03
Smp_194040.1 SmLINC02888-IBu 0.94 1.92e-07 1.61e-05
Smp_194770.1 SmLINC02888-IBu 0.80 2.00e-04 2.80e-03
Smp_195160.1 SmLINC02888-IBu 0.83 1.00e-04 1.40e-03
Smp_197110.1 SmLINC02888-IBu 0.85 5.21e-05 8.00e-04
Smp_199840.1 SmLINC02888-IBu 0.80 3.00e-04 3.10e-03
Smp_201990.1 SmLINC02888-IBu 0.90 2.88e-06 1.00e-04
Smp_202700.1 SmLINC02888-IBu 0.80 2.00e-04 2.80e-03
Smp_204480.1 SmLINC02888-IBu 0.91 1.62e-06 7.25e-05
Smp_205080.1 SmLINC02888-IBu 0.88 1.00e-05 2.00e-04
Smp_205800.1 SmLINC02888-IBu 0.89 7.16e-06 2.00e-04
Smp_205900.1 SmLINC02888-IBu 0.85 4.12e-05 7.00e-04
Smp_206130.1 SmLINC02888-IBu 0.84 7.95e-05 1.10e-03
Smp_206150.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_212280.1 SmLINC02888-IBu 0.84 7.91e-05 1.10e-03
Smp_212290.1 SmLINC02888-IBu 0.86 3.45e-05 6.00e-04
Smp_212390.1 SmLINC02888-IBu 0.84 8.61e-05 1.20e-03
Smp_213620.1 SmLINC02888-IBu -0.87 2.14e-05 4.00e-04
Smp_214150.1 SmLINC02888-IBu 0.80 3.00e-04 3.30e-03