Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02831-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:16586733-16601837 - Strand: +


Fig. S5 for SmLINC02831-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02831-IBu 0 -1.05 1.82 5.76 5.70
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02831-IBu 0.91 1.47e-06 7.00e-05
Smp_045200.1 SmLINC02831-IBu 0.94 1.69e-07 1.55e-05
Smp_058660.1 SmLINC02831-IBu 0.97 2.37e-10 2.02e-07
Smp_068270.1 SmLINC02831-IBu 0.90 4.46e-06 1.00e-04
Smp_082580.1 SmLINC02831-IBu 0.91 1.24e-06 6.22e-05
Smp_084270.1 SmLINC02831-IBu 0.90 3.03e-06 1.00e-04
Smp_123200.1 SmLINC02831-IBu 0.91 1.54e-06 7.24e-05
Smp_125210.1 SmLINC02831-IBu 0.92 6.14e-07 3.79e-05
Smp_134960.1 SmLINC02831-IBu 0.92 1.00e-06 5.36e-05
Smp_137320.1 SmLINC02831-IBu 0.98 4.37e-11 6.91e-08
Smp_141680.1 SmLINC02831-IBu 0.95 5.36e-08 7.08e-06
Smp_145400.1 SmLINC02831-IBu 0.96 5.91e-09 1.61e-06
Smp_151120.1 SmLINC02831-IBu 0.94 8.55e-08 9.72e-06
Smp_170280.1 SmLINC02831-IBu 0.95 3.07e-08 4.85e-06
Smp_172480.1 SmLINC02831-IBu 0.93 2.69e-07 2.14e-05
Smp_172960.1 SmLINC02831-IBu 0.93 3.17e-07 2.40e-05
Smp_194860.1 SmLINC02831-IBu 0.92 1.18e-06 6.00e-05
Smp_194960.1 SmLINC02831-IBu 0.90 3.14e-06 1.00e-04
Smp_200750.1 SmLINC02831-IBu 0.93 4.66e-07 3.13e-05
Smp_205270.1 SmLINC02831-IBu 0.94 7.79e-08 9.13e-06