Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02829-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:16507627-16511309 - Strand: +


Fig. S5 for SmLINC02829-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_160360.1 0 0.49 1.23 10.10 7.29
SmLINC02829-IBu 0 0.00 0.00 8.65 8.38
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02829-IBu 0.92 1.13e-06 5.82e-05
Smp_031040.1 SmLINC02829-IBu 0.95 5.10e-08 6.84e-06
Smp_034980.2 SmLINC02829-IBu 0.99 1.23e-13 1.84e-09
Smp_040970.2 SmLINC02829-IBu 0.93 2.41e-07 1.98e-05
Smp_045200.1 SmLINC02829-IBu 0.93 2.41e-07 1.98e-05
Smp_056360.3 SmLINC02829-IBu 0.96 1.14e-08 2.49e-06
Smp_058660.1 SmLINC02829-IBu 0.94 1.56e-07 1.47e-05
Smp_068270.1 SmLINC02829-IBu 0.96 5.38e-09 1.51e-06
Smp_079420.1 SmLINC02829-IBu 0.91 2.32e-06 9.66e-05
Smp_082580.1 SmLINC02829-IBu 0.91 1.75e-06 7.94e-05
Smp_084270.1 SmLINC02829-IBu 0.91 2.11e-06 9.04e-05
Smp_125200.1 SmLINC02829-IBu 0.91 2.29e-06 9.57e-05
Smp_125210.1 SmLINC02829-IBu 0.93 4.00e-07 2.81e-05
Smp_134960.1 SmLINC02829-IBu 0.91 1.65e-06 7.62e-05
Smp_137000.2 SmLINC02829-IBu 0.91 2.33e-06 9.71e-05
Smp_137320.1 SmLINC02829-IBu 0.92 1.17e-06 5.98e-05
Smp_141680.1 SmLINC02829-IBu 0.91 1.23e-06 6.19e-05
Smp_145400.1 SmLINC02829-IBu 0.94 1.28e-07 1.28e-05
Smp_150980.2 SmLINC02829-IBu 0.96 1.27e-08 2.68e-06
Smp_151120.1 SmLINC02829-IBu 0.91 1.21e-06 6.11e-05
Smp_154190.1 SmLINC02829-IBu 0.94 9.70e-08 1.05e-05
Smp_159070.2 SmLINC02829-IBu 0.93 3.59e-07 2.61e-05
Smp_160360.1 SmLINC02829-IBu 0.90 3.00e-06 1.00e-04
Smp_164550.1 SmLINC02829-IBu 0.95 1.71e-08 3.28e-06
Smp_170280.1 SmLINC02829-IBu 0.94 7.94e-08 9.24e-06
Smp_172480.1 SmLINC02829-IBu 0.97 1.76e-09 7.33e-07
Smp_172960.1 SmLINC02829-IBu 0.92 6.89e-07 4.10e-05
Smp_194860.1 SmLINC02829-IBu 0.90 4.09e-06 1.00e-04
Smp_194960.1 SmLINC02829-IBu 0.92 9.35e-07 5.09e-05
Smp_200750.1 SmLINC02829-IBu 0.90 3.60e-06 1.00e-04
Smp_203090.1 SmLINC02829-IBu 0.92 7.53e-07 4.37e-05
Smp_205270.1 SmLINC02829-IBu 0.96 1.13e-08 2.48e-06