Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02784-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:15409753-15410371 - Strand: +


Fig. S5 for SmLINC02784-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02784-IBu 0 -6.21 -1.07 0.46 3.57
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC02784-IBu 0.92 1.03e-06 5.47e-05
Smp_007950.1 SmLINC02784-IBu 0.95 2.57e-08 4.30e-06
Smp_016490.2 SmLINC02784-IBu 0.92 7.92e-07 4.53e-05
Smp_028870.1 SmLINC02784-IBu 0.91 2.13e-06 9.11e-05
Smp_037720.1 SmLINC02784-IBu 0.95 3.78e-08 5.58e-06
Smp_041540.1 SmLINC02784-IBu 0.96 7.35e-09 1.86e-06
Smp_070540.1 SmLINC02784-IBu 0.98 1.17e-10 1.29e-07
Smp_083430.1 SmLINC02784-IBu 0.90 2.82e-06 1.00e-04
Smp_085180.1 SmLINC02784-IBu 0.92 6.53e-07 3.96e-05
Smp_102780.1 SmLINC02784-IBu 0.92 6.96e-07 4.14e-05
Smp_105450.1 SmLINC02784-IBu 0.98 1.10e-10 1.23e-07
Smp_105450.2 SmLINC02784-IBu 0.97 9.76e-10 5.01e-07
Smp_123880.1 SmLINC02784-IBu 0.94 1.06e-07 1.13e-05
Smp_126340.1 SmLINC02784-IBu 0.98 1.33e-10 1.39e-07
Smp_130100.1 SmLINC02784-IBu 0.92 6.42e-07 3.91e-05
Smp_131410.1 SmLINC02784-IBu 0.94 6.56e-08 8.12e-06
Smp_136730.1 SmLINC02784-IBu 0.98 4.45e-11 7.00e-08
Smp_137460.1 SmLINC02784-IBu 0.90 2.68e-06 1.00e-04
Smp_137700.1 SmLINC02784-IBu 0.93 3.27e-07 2.45e-05
Smp_137720.1 SmLINC02784-IBu 0.93 4.09e-07 2.86e-05
Smp_138360.1 SmLINC02784-IBu 0.91 2.43e-06 9.98e-05
Smp_139160.1 SmLINC02784-IBu 0.97 1.92e-09 7.76e-07
Smp_139240.1 SmLINC02784-IBu 0.96 3.58e-09 1.16e-06
Smp_140720.1 SmLINC02784-IBu 0.90 3.55e-06 1.00e-04
Smp_162320.1 SmLINC02784-IBu 0.94 8.34e-08 9.56e-06
Smp_163700.1 SmLINC02784-IBu 0.94 1.38e-07 1.35e-05
Smp_164320.1 SmLINC02784-IBu 0.93 2.28e-07 1.90e-05
Smp_164400.1 SmLINC02784-IBu 0.93 4.28e-07 2.95e-05
Smp_181070.1 SmLINC02784-IBu 0.96 1.09e-08 2.42e-06
Smp_187140.1 SmLINC02784-IBu 0.96 8.77e-09 2.09e-06
Smp_194380.1 SmLINC02784-IBu 0.95 2.28e-08 3.97e-06
Smp_194910.1 SmLINC02784-IBu 0.96 6.40e-09 1.69e-06
Smp_196830.1 SmLINC02784-IBu 0.93 2.15e-07 1.83e-05
Smp_203030.1 SmLINC02784-IBu 0.90 2.58e-06 1.00e-04
Smp_205580.1 SmLINC02784-IBu 0.95 2.45e-08 4.16e-06