Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02737-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:14612027-14616549 - Strand: -


Fig. S5 for SmLINC02737-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
SmLINC02737-IBu 0 -0.51 -1.91 -5.38 -6.61

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.3 SmLINC02737-IBu 0.91 1.72e-06 7.82e-05
Smp_036270.4 SmLINC02737-IBu 0.93 2.58e-07 2.07e-05
Smp_097800.1 SmLINC02737-IBu 0.90 4.62e-06 1.00e-04
Smp_111640.1 SmLINC02737-IBu 0.90 4.67e-06 1.00e-04
Smp_160230.1 SmLINC02737-IBu 0.94 1.16e-07 1.20e-05