Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02689-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:12954308-12955658 - Strand: -


Fig. S5 for SmLINC02689-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02689-IBu 0 0.61 1.89 4.40 3.89
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02689-IBu 0.93 4.50e-07 3.05e-05
Smp_045200.1 SmLINC02689-IBu 0.94 9.94e-08 1.07e-05
Smp_058660.1 SmLINC02689-IBu 0.92 1.07e-06 5.60e-05
Smp_068270.1 SmLINC02689-IBu 0.90 2.52e-06 1.00e-04
Smp_082580.1 SmLINC02689-IBu 0.91 2.12e-06 9.08e-05
Smp_084270.1 SmLINC02689-IBu 0.93 2.83e-07 2.21e-05
Smp_118560.1 SmLINC02689-IBu 0.93 3.59e-07 2.61e-05
Smp_123200.1 SmLINC02689-IBu 0.90 4.17e-06 1.00e-04
Smp_125200.1 SmLINC02689-IBu 0.91 2.27e-06 9.52e-05
Smp_125210.1 SmLINC02689-IBu 0.95 5.50e-08 7.20e-06
Smp_134960.1 SmLINC02689-IBu 0.93 2.59e-07 2.08e-05
Smp_137320.1 SmLINC02689-IBu 0.94 1.17e-07 1.21e-05
Smp_141680.1 SmLINC02689-IBu 0.91 1.55e-06 7.28e-05
Smp_145400.1 SmLINC02689-IBu 0.90 3.30e-06 1.00e-04
Smp_163940.1 SmLINC02689-IBu 0.92 9.52e-07 5.15e-05
Smp_164550.1 SmLINC02689-IBu 0.92 8.82e-07 4.88e-05
Smp_170280.1 SmLINC02689-IBu 0.95 5.56e-08 7.25e-06
Smp_175020.1 SmLINC02689-IBu 0.93 5.09e-07 3.32e-05
Smp_194960.1 SmLINC02689-IBu 0.91 2.15e-06 9.17e-05
Smp_194970.1 SmLINC02689-IBu 0.90 2.97e-06 1.00e-04
Smp_200750.1 SmLINC02689-IBu 0.95 1.83e-08 3.42e-06
Smp_205270.1 SmLINC02689-IBu 0.90 3.40e-06 1.00e-04