Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02667-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:11186409-11187130 - Strand: +


Fig. S5 for SmLINC02667-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02667-IBu 0 0.00 3.36 4.58 7.79
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02667-IBu 0.94 9.78e-08 1.06e-05
Smp_037720.1 SmLINC02667-IBu 0.91 1.37e-06 6.66e-05
Smp_041540.1 SmLINC02667-IBu 0.91 1.46e-06 6.98e-05
Smp_070540.1 SmLINC02667-IBu 0.95 3.58e-08 5.39e-06
Smp_083430.1 SmLINC02667-IBu 0.90 4.43e-06 1.00e-04
Smp_105450.1 SmLINC02667-IBu 0.95 3.93e-08 5.74e-06
Smp_105450.2 SmLINC02667-IBu 0.92 7.89e-07 4.52e-05
Smp_123880.1 SmLINC02667-IBu 0.91 1.24e-06 6.24e-05
Smp_126340.1 SmLINC02667-IBu 0.96 9.68e-09 2.23e-06
Smp_131410.1 SmLINC02667-IBu 0.91 1.41e-06 6.81e-05
Smp_136730.1 SmLINC02667-IBu 0.95 5.07e-08 6.82e-06
Smp_139160.1 SmLINC02667-IBu 0.91 1.53e-06 7.23e-05
Smp_139240.1 SmLINC02667-IBu 0.93 2.78e-07 2.18e-05
Smp_163700.1 SmLINC02667-IBu 0.93 3.97e-07 2.80e-05
Smp_181070.1 SmLINC02667-IBu 0.90 3.48e-06 1.00e-04
Smp_187140.1 SmLINC02667-IBu 0.92 6.78e-07 4.06e-05
Smp_194380.1 SmLINC02667-IBu 0.93 2.64e-07 2.11e-05
Smp_194910.1 SmLINC02667-IBu 0.92 1.15e-06 5.90e-05
Smp_196830.1 SmLINC02667-IBu 0.92 7.66e-07 4.42e-05
Smp_205580.1 SmLINC02667-IBu 0.92 9.87e-07 5.28e-05