Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02663-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:11000424-11003794 - Strand: -


Fig. 7A S3 for SmLINC02663-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_202060.1 0 -0.10 -3.67 -5.11 -5.11
SmLINC02663-IBu 0 6.75 8.97 8.16 7.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_202060.1 SmLINC02663-IBu -0.55 3.22e-02 8.11e-02
Fig. 6A for SmLINC02663-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059170.1 0 0.39 6.13 4.57 -4.44
Smp_206270.1 0 1.06 4.27 1.21 -0.69
Smp_198690.1 0 0.21 4.21 3.40 3.57
Smp_105220.1 0 1.94 5.32 4.66 4.77
Smp_169680.1 0 3.42 6.47 5.96 4.77
Smp_202120.1 0 -0.66 7.33 6.40 5.50
SmLINC02663-IBu 0 6.75 8.97 8.16 7.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059170.1 SmLINC02663-IBu 0.82 1.00e-04 2.10e-03
Smp_105220.1 SmLINC02663-IBu 0.82 1.00e-04 1.80e-03
Smp_169680.1 SmLINC02663-IBu 0.80 3.00e-04 3.20e-03
Smp_198690.1 SmLINC02663-IBu 0.82 1.00e-04 1.90e-03
Smp_202120.1 SmLINC02663-IBu 0.81 2.00e-04 2.50e-03
Smp_206270.1 SmLINC02663-IBu 0.80 2.00e-04 3.10e-03