Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02646-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:10323480-10327157 - Strand: +


Fig. 6A for SmLINC02646-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_161110.1 0 -0.28 0.09 -2.05 -10.94
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_194110.1 0 0.85 0.42 -9.97 -9.97
Smp_194140.1 0 0.06 0.11 -9.88 -9.88
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_061920.2 0 -0.46 -0.11 -1.74 -9.49
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_161270.1 0 1.27 1.64 -8.43 -8.43
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_077820.1 0 -0.65 -0.64 -4.87 -7.00
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_032750.1 0 0.69 0.55 -6.01 -6.60
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_034980.1 0 0.00 -0.47 -4.42 -5.42
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_161000.1 0 -0.38 -0.54 -4.58 -5.19
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_203990.1 0 0.81 0.18 -4.26 -4.99
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_092780.1 0 -0.13 -0.30 -4.81 -4.98
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_080280.1 0 -0.42 -0.06 -4.59 -4.87
Smp_011660.2 0 -0.07 -0.17 -3.53 -4.85
Smp_087070.1 0 2.08 2.60 -2.67 -4.80
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_034840.2 0 -0.14 -0.56 -4.27 -4.43
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_054750.1 0 -0.22 -0.71 -3.93 -4.21
Smp_155690.1 0 0.49 1.13 -3.13 -4.07
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_151220.1 0 1.28 1.74 -3.16 -3.91
Smp_159380.1 0 0.56 1.21 -4.02 -3.82
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_093690.1 0 0.09 0.67 -3.40 -3.42
Smp_044550.1 0 -0.20 0.07 -4.58 -3.40
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_200810.1 0 1.79 3.97 -0.86 -1.95
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_076560.2 0 1.37 1.23 -7.29 -0.73
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_204000.1 0 4.82 5.19 1.55 0.47
Smp_011660.3 0 3.68 4.23 1.47 0.71
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_202260.1 0 -1.57 -6.78 0.16 1.04
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_008910.1 SmLINC02646-IBu 0.84 8.75e-05 1.20e-03
Smp_011660.2 SmLINC02646-IBu 0.87 2.07e-05 4.00e-04
Smp_011660.3 SmLINC02646-IBu 0.87 2.24e-05 4.00e-04
Smp_012010.1 SmLINC02646-IBu 0.89 8.03e-06 2.00e-04
Smp_015070.2 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_017650.1 SmLINC02646-IBu 0.90 4.68e-06 1.00e-04
Smp_018590.1 SmLINC02646-IBu 0.85 5.04e-05 8.00e-04
Smp_018800.1 SmLINC02646-IBu 0.80 3.00e-04 3.10e-03
Smp_019940.5 SmLINC02646-IBu 0.83 1.00e-04 1.60e-03
Smp_021340.3 SmLINC02646-IBu 0.85 5.91e-05 9.00e-04
Smp_022320.1 SmLINC02646-IBu 0.93 5.14e-07 3.21e-05
Smp_024140.1 SmLINC02646-IBu 0.85 5.53e-05 9.00e-04
Smp_024820.1 SmLINC02646-IBu 0.92 5.54e-07 3.38e-05
Smp_027990.1 SmLINC02646-IBu 0.89 5.15e-06 1.00e-04
Smp_029240.1 SmLINC02646-IBu 0.87 1.72e-05 3.00e-04
Smp_031770.3 SmLINC02646-IBu 0.89 7.35e-06 2.00e-04
Smp_032120.1 SmLINC02646-IBu 0.84 6.04e-05 9.00e-04
Smp_032280.1 SmLINC02646-IBu 0.81 1.00e-04 2.30e-03
Smp_032320.2 SmLINC02646-IBu 0.90 2.94e-06 1.00e-04
Smp_032740.1 SmLINC02646-IBu 0.87 1.66e-05 3.00e-04
Smp_032750.1 SmLINC02646-IBu 0.97 5.48e-10 3.19e-07
Smp_033670.2 SmLINC02646-IBu 0.86 3.16e-05 6.00e-04
Smp_033950.3 SmLINC02646-IBu 0.80 3.00e-04 3.40e-03
Smp_034840.1 SmLINC02646-IBu 0.83 1.00e-04 1.40e-03
Smp_034840.2 SmLINC02646-IBu 0.89 7.18e-06 2.00e-04
Smp_034980.1 SmLINC02646-IBu 0.81 2.00e-04 2.60e-03
Smp_035200.2 SmLINC02646-IBu 0.87 2.21e-05 4.00e-04
Smp_036270.3 SmLINC02646-IBu 0.85 5.18e-05 8.00e-04
Smp_037610.1 SmLINC02646-IBu 0.89 6.06e-06 1.00e-04
Smp_038980.2 SmLINC02646-IBu 0.80 2.00e-04 2.90e-03
Smp_040970.3 SmLINC02646-IBu 0.86 2.72e-05 5.00e-04
Smp_044550.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_049600.3 SmLINC02646-IBu 0.87 2.24e-05 4.00e-04
Smp_052290.1 SmLINC02646-IBu 0.84 7.01e-05 1.00e-03
Smp_054750.1 SmLINC02646-IBu 0.80 2.00e-04 3.10e-03
Smp_059210.7 SmLINC02646-IBu 0.80 3.00e-04 3.20e-03
Smp_059340.3 SmLINC02646-IBu 0.91 2.01e-06 8.45e-05
Smp_061920.2 SmLINC02646-IBu 0.88 1.16e-05 2.00e-04
Smp_062610.2 SmLINC02646-IBu 0.92 6.76e-07 3.89e-05
Smp_063650.3 SmLINC02646-IBu 0.87 2.37e-05 4.00e-04
Smp_068270.3 SmLINC02646-IBu 0.90 3.71e-06 1.00e-04
Smp_075640.2 SmLINC02646-IBu 0.84 6.39e-05 1.00e-03
Smp_076560.2 SmLINC02646-IBu 0.93 4.58e-07 2.95e-05
Smp_077820.1 SmLINC02646-IBu 0.82 1.00e-04 1.80e-03
Smp_077880.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_079260.1 SmLINC02646-IBu 0.91 2.05e-06 8.57e-05
Smp_080280.1 SmLINC02646-IBu 0.84 8.27e-05 1.20e-03
Smp_083380.2 SmLINC02646-IBu 0.84 6.74e-05 1.00e-03
Smp_084210.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_087070.1 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_091190.1 SmLINC02646-IBu 0.86 2.75e-05 5.00e-04
Smp_092780.1 SmLINC02646-IBu 0.85 4.75e-05 8.00e-04
Smp_093690.1 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_098370.1 SmLINC02646-IBu 0.83 9.56e-05 1.30e-03
Smp_099160.4 SmLINC02646-IBu 0.86 2.53e-05 5.00e-04
Smp_099560.1 SmLINC02646-IBu 0.88 1.48e-05 3.00e-04
Smp_103540.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_103930.1 SmLINC02646-IBu 0.90 3.33e-06 1.00e-04
Smp_106750.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_112520.1 SmLINC02646-IBu 0.80 3.00e-04 3.20e-03
Smp_112930.1 SmLINC02646-IBu 0.83 1.00e-04 1.50e-03
Smp_118960.1 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_123000.2 SmLINC02646-IBu 0.88 1.10e-05 2.00e-04
Smp_123870.1 SmLINC02646-IBu 0.86 2.55e-05 5.00e-04
Smp_126560.1 SmLINC02646-IBu 0.91 1.85e-06 7.95e-05
Smp_128400.1 SmLINC02646-IBu 0.86 3.60e-05 6.00e-04
Smp_129780.1 SmLINC02646-IBu 0.87 1.52e-05 3.00e-04
Smp_136120.1 SmLINC02646-IBu 0.86 3.01e-05 5.00e-04
Smp_136840.1 SmLINC02646-IBu 0.89 5.39e-06 1.00e-04
Smp_137330.1 SmLINC02646-IBu 0.80 2.00e-04 2.80e-03
Smp_138140.1 SmLINC02646-IBu 0.95 2.59e-08 4.07e-06
Smp_138890.1 SmLINC02646-IBu 0.82 1.00e-04 2.00e-03
Smp_139940.1 SmLINC02646-IBu 0.80 2.00e-04 3.00e-03
Smp_139980.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_140130.1 SmLINC02646-IBu 0.90 3.53e-06 1.00e-04
Smp_142980.1 SmLINC02646-IBu 0.83 1.00e-04 1.60e-03
Smp_143180.1 SmLINC02646-IBu 0.93 2.74e-07 2.06e-05
Smp_144120.1 SmLINC02646-IBu 0.81 2.00e-04 2.60e-03
Smp_146920.1 SmLINC02646-IBu 0.90 3.60e-06 1.00e-04
Smp_149220.1 SmLINC02646-IBu 0.86 2.58e-05 5.00e-04
Smp_149870.1 SmLINC02646-IBu 0.89 5.21e-06 1.00e-04
Smp_151220.1 SmLINC02646-IBu 0.84 7.81e-05 1.10e-03
Smp_152170.1 SmLINC02646-IBu 0.93 3.37e-07 2.38e-05
Smp_152900.1 SmLINC02646-IBu 0.85 5.84e-05 9.00e-04
Smp_153650.1 SmLINC02646-IBu 0.80 3.00e-04 3.20e-03
Smp_155170.1 SmLINC02646-IBu 0.88 1.34e-05 3.00e-04
Smp_155690.1 SmLINC02646-IBu 0.84 7.89e-05 1.10e-03
Smp_157270.1 SmLINC02646-IBu 0.92 1.10e-06 5.49e-05
Smp_157280.1 SmLINC02646-IBu 0.86 3.79e-05 6.00e-04
Smp_157840.1 SmLINC02646-IBu 0.91 2.10e-06 8.71e-05
Smp_159380.1 SmLINC02646-IBu 0.91 2.43e-06 9.66e-05
Smp_160670.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_161000.1 SmLINC02646-IBu 0.80 3.00e-04 3.30e-03
Smp_161110.1 SmLINC02646-IBu 0.86 3.19e-05 6.00e-04
Smp_161270.1 SmLINC02646-IBu 0.86 3.48e-05 6.00e-04
Smp_161280.1 SmLINC02646-IBu 0.86 2.52e-05 5.00e-04
Smp_168800.1 SmLINC02646-IBu 0.92 1.14e-06 5.65e-05
Smp_169500.1 SmLINC02646-IBu 0.90 3.91e-06 1.00e-04
Smp_171420.1 SmLINC02646-IBu 0.86 3.60e-05 6.00e-04
Smp_174750.1 SmLINC02646-IBu 0.92 1.12e-06 5.59e-05
Smp_180050.1 SmLINC02646-IBu 0.85 5.59e-05 9.00e-04
Smp_180630.1 SmLINC02646-IBu 0.91 1.65e-06 7.34e-05
Smp_184370.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_189180.2 SmLINC02646-IBu 0.92 1.04e-06 5.28e-05
Smp_190370.1 SmLINC02646-IBu 0.84 6.11e-05 9.00e-04
Smp_190900.1 SmLINC02646-IBu 0.97 2.15e-10 1.74e-07
Smp_193650.1 SmLINC02646-IBu 0.84 6.28e-05 1.00e-03
Smp_194110.1 SmLINC02646-IBu 0.88 1.20e-05 3.00e-04
Smp_194140.1 SmLINC02646-IBu 0.81 2.00e-04 2.60e-03
Smp_194150.1 SmLINC02646-IBu 0.88 1.16e-05 2.00e-04
Smp_194670.1 SmLINC02646-IBu 0.85 4.63e-05 8.00e-04
Smp_196410.1 SmLINC02646-IBu 0.91 1.68e-06 7.44e-05
Smp_197150.1 SmLINC02646-IBu 0.94 1.39e-07 1.29e-05
Smp_200120.1 SmLINC02646-IBu 0.88 1.48e-05 3.00e-04
Smp_200810.1 SmLINC02646-IBu 0.81 2.00e-04 2.30e-03
Smp_202260.1 SmLINC02646-IBu -0.81 1.00e-04 2.30e-03
Smp_203990.1 SmLINC02646-IBu 0.84 8.58e-05 1.20e-03
Smp_204000.1 SmLINC02646-IBu 0.80 2.00e-04 2.90e-03
Smp_204820.1 SmLINC02646-IBu 0.80 2.00e-04 2.80e-03
Smp_205050.1 SmLINC02646-IBu 0.81 2.00e-04 2.40e-03
Smp_212350.1 SmLINC02646-IBu 0.90 2.52e-06 9.91e-05
Fig. S5 for SmLINC02646-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
Smp_017650.1 0 9.51 10.68 -7.98 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC02646-IBu 0.90 4.68e-06 1.00e-04
Smp_059340.3 SmLINC02646-IBu 0.91 2.01e-06 8.75e-05
Smp_062610.2 SmLINC02646-IBu 0.92 6.76e-07 4.05e-05
Smp_168800.1 SmLINC02646-IBu 0.92 1.14e-06 5.87e-05