Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02645-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:10310154-10327157 - Strand: +


Fig. S5 for SmLINC02645-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
SmLINC02645-IBu 0 0.00 5.05 7.96 6.85
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC02645-IBu 0.91 1.77e-06 8.01e-05
Smp_017610.1 SmLINC02645-IBu 0.90 4.29e-06 1.00e-04
Smp_034980.2 SmLINC02645-IBu 0.91 1.22e-06 6.15e-05
Smp_045200.1 SmLINC02645-IBu 0.91 1.47e-06 7.03e-05
Smp_068270.1 SmLINC02645-IBu 0.94 1.80e-07 1.61e-05
Smp_084270.1 SmLINC02645-IBu 0.90 3.73e-06 1.00e-04
Smp_125200.1 SmLINC02645-IBu 0.95 6.04e-08 7.67e-06
Smp_125210.1 SmLINC02645-IBu 0.90 2.54e-06 1.00e-04
Smp_131840.1 SmLINC02645-IBu 0.90 4.74e-06 1.00e-04
Smp_150980.2 SmLINC02645-IBu 0.94 6.22e-08 7.83e-06
Smp_154180.1 SmLINC02645-IBu 0.90 4.50e-06 1.00e-04
Smp_154190.1 SmLINC02645-IBu 0.93 2.99e-07 2.30e-05
Smp_160360.1 SmLINC02645-IBu 0.93 5.08e-07 3.32e-05
Smp_164550.1 SmLINC02645-IBu 0.93 2.51e-07 2.03e-05
Smp_170280.1 SmLINC02645-IBu 0.90 3.05e-06 1.00e-04
Smp_194960.1 SmLINC02645-IBu 0.90 3.42e-06 1.00e-04
Smp_197400.1 SmLINC02645-IBu 0.91 2.24e-06 9.43e-05