Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02644-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:10056677-10059486 - Strand: -


Fig. S5 for SmLINC02644-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02644-IBu 0 -2.73 -2.73 -0.60 7.06
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02644-IBu 0.92 5.49e-07 3.50e-05
Smp_070540.1 SmLINC02644-IBu 0.93 3.21e-07 2.41e-05
Smp_105450.1 SmLINC02644-IBu 0.95 3.85e-08 5.66e-06
Smp_105450.2 SmLINC02644-IBu 0.92 8.00e-07 4.56e-05
Smp_123880.1 SmLINC02644-IBu 0.91 2.44e-06 1.00e-04
Smp_126340.1 SmLINC02644-IBu 0.96 1.10e-08 2.43e-06
Smp_131410.1 SmLINC02644-IBu 0.90 3.40e-06 1.00e-04
Smp_136730.1 SmLINC02644-IBu 0.94 7.20e-08 8.65e-06
Smp_137700.1 SmLINC02644-IBu 0.90 3.25e-06 1.00e-04
Smp_137720.1 SmLINC02644-IBu 0.90 2.88e-06 1.00e-04
Smp_139160.1 SmLINC02644-IBu 0.91 1.23e-06 6.20e-05
Smp_139240.1 SmLINC02644-IBu 0.93 4.41e-07 3.01e-05
Smp_163700.1 SmLINC02644-IBu 0.92 6.60e-07 3.98e-05
Smp_181070.1 SmLINC02644-IBu 0.90 4.35e-06 1.00e-04
Smp_187140.1 SmLINC02644-IBu 0.91 1.28e-06 6.38e-05
Smp_194380.1 SmLINC02644-IBu 0.92 5.31e-07 3.42e-05
Smp_194910.1 SmLINC02644-IBu 0.91 1.49e-06 7.08e-05
Smp_205580.1 SmLINC02644-IBu 0.92 8.21e-07 4.64e-05